Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01551 ATGTATGTTAAGGAAAAAATCCGAGTTGCTCTTTATGTTCAAAAGGCAGCACTACAGTTTATTGATGCCGTGAATCGGGATGAGTACCATCTGTCAGATGAGACTAGGAGTGCTGGCTATAGTATTCATCCAGATGAGCTTGCATCCATAGTCCGTAGCCATGATTACAAGGCATTGAGATTCCATGGTGGAGTGGAAGGACTTTCAAGGAAAGTTGCTGTCACACTAGATGCAGGTGTCAGTGAAAAGGATACATCCAAGAGACAAGAGATTTATGGTTACAATCGTTACACAGAGAAACCTTCCAGACCCTTTTGGGTGTTTGTATGGGAAGCATTACACGACTTGACATTAATCATCCTAATATTTTGTGCACTAATTTCTTTAGGTGTTGGAATTGCCACAGAAGGATGGCCGAAGGGAACATATGATGGTTTAGGAATTCTACTCAGTATACTATTGGTCGTCTTGGTTACTTCTATTAGTGATTATAAGCAGTCTTTGCAATTCAAGGATCTTGACAGGGAGAAGAAAAAAATTTATGTTGATGTCACCAGGGATGGGCTGAGGAAAAAAGTTTCGATTTATGACTTGGTTGTTGGTGATATTGTTCATCTATCCATTGGAGATCAGGTTCCCGCTGATGGGGTTTTCATATCAGGATATAGTTTACTAATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAACATAGATGAGGAGAAACCATTTCTTCTATCAGGAACAAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGTATGAAAACCGAATGGGGAAAATTGATGGAAACTCTCAGCGAGGGAGGAGAAGATGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATCGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGGAGGTTTCTCGGAGAAAAAGCTGCTCACCATCAATTTACGAAGTGGACTTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCCGTTGCAGTTACCATAATAGTTGTCGCAGTTCCTGAAGGTTTACCACTGGCAGTGACATTAAGCCTTGCCTTTGCTATGAAGAAATTGATGGATGAAAGAGCACTAGTTAGGCATCTTTCTGCATGTGAAACAATGGGTTCGGCCAGTTGCATTTGCACAGATAAGACTGGGACGTTAACCACAAACCATATGATAGTTAGCCGTGCATGGGTATGCGAAAATTTTATGGAGAATAAAGACCATGGGAGTGTAGTCAAATTGAAATCAGAGATCTCTGAAGACGTTGTAGGCATACTTTTGCAGTCCATATTTCAAAATACTAGCTGCGAAGTGACTAAAGATAAAGAAGGGAAGAACTCAATCGTTGGTGGAACACCAACAGAATCAGCACTATTAGAGTTTGGCATCCATTTGGGTGGGGATTTTCGTGCCCAACGTACAGAATATAGGATACTTAAGGTTGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCGCTTCCTAATGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTAAGTATGTGTGACAAGTATATTGATTCCAATGGAGAATCTATTGATTTAACAGAAGAGAAGGTAAATAATGCTACAAATGTTATCAATAGTTTTGCCAATGAAGCTTTGAGGACACTTTGCTTGGCCTTCAAAGATATAGGGGACTCTGGTGACAAATCTATTCCAGATGATGGATATACATTAATTGCAATTGTTGGGATCAAGGATCCTGTACGCCCAGGGGTCAAGGAAGCTGTTAAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACTGGCGACAATATTAATACAGCGAAGGCTATTGCTAAAGAATGTGGTATACTTACAGACGATGGTTCAGCTATGGAAGGACCAAACTTCCGTAATTTATCTCCAGAACAGATGAAGCAAATTATACCAAAACTCCAGGTGATGGCTCGGTCCTTGCCACTGGACAAATACACATTGGTTAACAATTTGCGGAGTATGGACGAGGTCGTTGCAGTGACTGGAGATGGGACAAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCCGGGACTGAGGTGGCCAAAGAAAATGCTGATGTCATCATAATGGATGACAATTTTTCAACTATTGTAAATGTTGCAAGATGGGGACGTGCGGTGTACATTAACATACAAAAGTTTGTGCAGTTTCAGCTAACAGTTAACATTGTTGCTCTAGTGATCAATTTTGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTGCAGTTGCTTTGGGTGAACTTGATTATGGACACTCTTGGTGCTTTGGCACTGGCCACAGAGCCTCCAAATGATGGACTTATGCAGAGACCTCCAATTCCCAAGGGGGTTAACTTTATTACCAAAGCCATGTGGAGGAACATCATTGGTCAGAGTATCTATCAACTTGCTGTTCTTGCAGTTCTTAATTTTGAGGGAAAGCAACTTCTTGGACTTAATGGATCTGATTCCACAAAAGTTCTCAACACTTTGATATTCAACTCATTTGTGTTCTGCCAGATAGAAAAAATCAACATCTTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGGAGTAATGGTATCCACAGTAGGGTTTCAAATAATAATTATAGAACTTTTGGGAGCTTTTGCAAGCACTGTACCACTGAGCTGGGAACTGTGGGGACTGAGTGTGTTGATTGGATTTGTGAGCATGCCAGTTGCAGTTGTGTTGAAGCTCATCCCTGTTCGTAAAGAAGAAGCATTCACAGCCCATCATGATGGCTATGAACCAATCCCTTCTGGCCCAGAGCTGGCTTGA 2916 41.53 MYVKEKIRVALYVQKAALQFIDAVNRDEYHLSDETRSAGYSIHPDELASIVRSHDYKALRFHGGVEGLSRKVAVTLDAGVSEKDTSKRQEIYGYNRYTEKPSRPFWVFVWEALHDLTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYKQSLQFKDLDREKKKIYVDVTRDGLRKKVSIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVNIDEEKPFLLSGTKVQDGSGKMMVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLGEKAAHHQFTKWTSSDALKLLDFFAVAVTIIVVAVPEGLPLAVTLSLAFAMKKLMDERALVRHLSACETMGSASCICTDKTGTLTTNHMIVSRAWVCENFMENKDHGSVVKLKSEISEDVVGILLQSIFQNTSCEVTKDKEGKNSIVGGTPTESALLEFGIHLGGDFRAQRTEYRILKVEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILSMCDKYIDSNGESIDLTEEKVNNATNVINSFANEALRTLCLAFKDIGDSGDKSIPDDGYTLIAIVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTDDGSAMEGPNFRNLSPEQMKQIIPKLQVMARSLPLDKYTLVNNLRSMDEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVNFITKAMWRNIIGQSIYQLAVLAVLNFEGKQLLGLNGSDSTKVLNTLIFNSFVFCQIEKINIFRGMFSSWIFLGVMVSTVGFQIIIIELLGAFASTVPLSWELWGLSVLIGFVSMPVAVVLKLIPVRKEEAFTAHHDGYEPIPSGPELA 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26477706 26485140 - Lsi03G015510.1 Lsi03g01551 659301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01551 971 SUPERFAMILY HAD-like 395 801 IPR036412 -
Lsi03g01551 971 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 402 606 IPR023299 GO:0000166
Lsi03g01551 971 Gene3D - 393 741 IPR023214 -
Lsi03g01551 971 SUPERFAMILY Calcium ATPase, transduction domain A 181 277 IPR008250 -
Lsi03g01551 971 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 148 434 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi03g01551 971 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 662 784 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi03g01551 971 Pfam E1-E2 ATPase 179 374 - -
Lsi03g01551 971 Coils Coil 545 565 - -
Lsi03g01551 971 SFLD p-type atpase 378 748 IPR044492 -
Lsi03g01551 971 PANTHER CATION TRANSPORTING ATPASE 4 955 - -
Lsi03g01551 971 Pfam Cation transporter/ATPase, N-terminus 62 128 IPR004014 -
Lsi03g01551 971 ProSitePatterns E1-E2 ATPases phosphorylation site. 398 404 IPR018303 -
Lsi03g01551 971 Gene3D - 111 946 - -
Lsi03g01551 971 Pfam Cation transporting ATPase, C-terminus 781 946 IPR006068 -
Lsi03g01551 971 Pfam Cation transport ATPase (P-type) 452 536 - -
Lsi03g01551 971 Gene3D - 406 601 IPR023299 GO:0000166
Lsi03g01551 971 SFLD C1.7: P-type atpase like 378 748 - -
Lsi03g01551 971 PRINTS H+-transporting ATPase (proton pump) signature 555 573 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi03g01551 971 PRINTS H+-transporting ATPase (proton pump) signature 696 712 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi03g01551 971 PRINTS H+-transporting ATPase (proton pump) signature 728 753 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi03g01551 971 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 54 949 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lsi03g01551 971 SMART Cation_ATPase_N_a_2 38 133 IPR004014 -
Lsi03g01551 971 PANTHER CALCIUM-TRANSPORTING ATPASE 4 955 - -
Lsi03g01551 971 SUPERFAMILY Calcium ATPase, transmembrane domain M 62 949 IPR023298 -
Lsi03g01551 971 Gene3D - 79 279 - -
Lsi03g01551 971 PRINTS P-type cation-transporting ATPase superfamily signature 720 732 - -
Lsi03g01551 971 PRINTS P-type cation-transporting ATPase superfamily signature 616 626 - -
Lsi03g01551 971 PRINTS P-type cation-transporting ATPase superfamily signature 594 605 - -
Lsi03g01551 971 PRINTS P-type cation-transporting ATPase superfamily signature 396 410 - -
Lsi03g01551 971 PRINTS P-type cation-transporting ATPase superfamily signature 227 241 - -
Lsi03g01551 971 PRINTS P-type cation-transporting ATPase superfamily signature 696 715 - -
Lsi03g01551 971 CDD P-type_ATPase_Ca_PMCA-like 86 829 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01551 Lsi-Chr3:26477706 Lsi09g00868 Lsi-Chr9:10096639 0 dispersed
Lsi11g01706 Lsi-Chr11:25213447 Lsi03g01551 Lsi-Chr3:26477706 1.33E-18 dispersed
Lsi03g01551 Lsi-Chr3:26477706 Lsi01g00892 Lsi-Chr1:7182041 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01551 K01537 - csv:101206199 1774.6