Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01551 | ATGTATGTTAAGGAAAAAATCCGAGTTGCTCTTTATGTTCAAAAGGCAGCACTACAGTTTATTGATGCCGTGAATCGGGATGAGTACCATCTGTCAGATGAGACTAGGAGTGCTGGCTATAGTATTCATCCAGATGAGCTTGCATCCATAGTCCGTAGCCATGATTACAAGGCATTGAGATTCCATGGTGGAGTGGAAGGACTTTCAAGGAAAGTTGCTGTCACACTAGATGCAGGTGTCAGTGAAAAGGATACATCCAAGAGACAAGAGATTTATGGTTACAATCGTTACACAGAGAAACCTTCCAGACCCTTTTGGGTGTTTGTATGGGAAGCATTACACGACTTGACATTAATCATCCTAATATTTTGTGCACTAATTTCTTTAGGTGTTGGAATTGCCACAGAAGGATGGCCGAAGGGAACATATGATGGTTTAGGAATTCTACTCAGTATACTATTGGTCGTCTTGGTTACTTCTATTAGTGATTATAAGCAGTCTTTGCAATTCAAGGATCTTGACAGGGAGAAGAAAAAAATTTATGTTGATGTCACCAGGGATGGGCTGAGGAAAAAAGTTTCGATTTATGACTTGGTTGTTGGTGATATTGTTCATCTATCCATTGGAGATCAGGTTCCCGCTGATGGGGTTTTCATATCAGGATATAGTTTACTAATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAACATAGATGAGGAGAAACCATTTCTTCTATCAGGAACAAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGTATGAAAACCGAATGGGGAAAATTGATGGAAACTCTCAGCGAGGGAGGAGAAGATGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATCGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGGAGGTTTCTCGGAGAAAAAGCTGCTCACCATCAATTTACGAAGTGGACTTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCCGTTGCAGTTACCATAATAGTTGTCGCAGTTCCTGAAGGTTTACCACTGGCAGTGACATTAAGCCTTGCCTTTGCTATGAAGAAATTGATGGATGAAAGAGCACTAGTTAGGCATCTTTCTGCATGTGAAACAATGGGTTCGGCCAGTTGCATTTGCACAGATAAGACTGGGACGTTAACCACAAACCATATGATAGTTAGCCGTGCATGGGTATGCGAAAATTTTATGGAGAATAAAGACCATGGGAGTGTAGTCAAATTGAAATCAGAGATCTCTGAAGACGTTGTAGGCATACTTTTGCAGTCCATATTTCAAAATACTAGCTGCGAAGTGACTAAAGATAAAGAAGGGAAGAACTCAATCGTTGGTGGAACACCAACAGAATCAGCACTATTAGAGTTTGGCATCCATTTGGGTGGGGATTTTCGTGCCCAACGTACAGAATATAGGATACTTAAGGTTGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCGCTTCCTAATGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTAAGTATGTGTGACAAGTATATTGATTCCAATGGAGAATCTATTGATTTAACAGAAGAGAAGGTAAATAATGCTACAAATGTTATCAATAGTTTTGCCAATGAAGCTTTGAGGACACTTTGCTTGGCCTTCAAAGATATAGGGGACTCTGGTGACAAATCTATTCCAGATGATGGATATACATTAATTGCAATTGTTGGGATCAAGGATCCTGTACGCCCAGGGGTCAAGGAAGCTGTTAAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACTGGCGACAATATTAATACAGCGAAGGCTATTGCTAAAGAATGTGGTATACTTACAGACGATGGTTCAGCTATGGAAGGACCAAACTTCCGTAATTTATCTCCAGAACAGATGAAGCAAATTATACCAAAACTCCAGGTGATGGCTCGGTCCTTGCCACTGGACAAATACACATTGGTTAACAATTTGCGGAGTATGGACGAGGTCGTTGCAGTGACTGGAGATGGGACAAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCCGGGACTGAGGTGGCCAAAGAAAATGCTGATGTCATCATAATGGATGACAATTTTTCAACTATTGTAAATGTTGCAAGATGGGGACGTGCGGTGTACATTAACATACAAAAGTTTGTGCAGTTTCAGCTAACAGTTAACATTGTTGCTCTAGTGATCAATTTTGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTGCAGTTGCTTTGGGTGAACTTGATTATGGACACTCTTGGTGCTTTGGCACTGGCCACAGAGCCTCCAAATGATGGACTTATGCAGAGACCTCCAATTCCCAAGGGGGTTAACTTTATTACCAAAGCCATGTGGAGGAACATCATTGGTCAGAGTATCTATCAACTTGCTGTTCTTGCAGTTCTTAATTTTGAGGGAAAGCAACTTCTTGGACTTAATGGATCTGATTCCACAAAAGTTCTCAACACTTTGATATTCAACTCATTTGTGTTCTGCCAGATAGAAAAAATCAACATCTTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGGAGTAATGGTATCCACAGTAGGGTTTCAAATAATAATTATAGAACTTTTGGGAGCTTTTGCAAGCACTGTACCACTGAGCTGGGAACTGTGGGGACTGAGTGTGTTGATTGGATTTGTGAGCATGCCAGTTGCAGTTGTGTTGAAGCTCATCCCTGTTCGTAAAGAAGAAGCATTCACAGCCCATCATGATGGCTATGAACCAATCCCTTCTGGCCCAGAGCTGGCTTGA | 2916 | 41.53 | MYVKEKIRVALYVQKAALQFIDAVNRDEYHLSDETRSAGYSIHPDELASIVRSHDYKALRFHGGVEGLSRKVAVTLDAGVSEKDTSKRQEIYGYNRYTEKPSRPFWVFVWEALHDLTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYKQSLQFKDLDREKKKIYVDVTRDGLRKKVSIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVNIDEEKPFLLSGTKVQDGSGKMMVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLGEKAAHHQFTKWTSSDALKLLDFFAVAVTIIVVAVPEGLPLAVTLSLAFAMKKLMDERALVRHLSACETMGSASCICTDKTGTLTTNHMIVSRAWVCENFMENKDHGSVVKLKSEISEDVVGILLQSIFQNTSCEVTKDKEGKNSIVGGTPTESALLEFGIHLGGDFRAQRTEYRILKVEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILSMCDKYIDSNGESIDLTEEKVNNATNVINSFANEALRTLCLAFKDIGDSGDKSIPDDGYTLIAIVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTDDGSAMEGPNFRNLSPEQMKQIIPKLQVMARSLPLDKYTLVNNLRSMDEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVNFITKAMWRNIIGQSIYQLAVLAVLNFEGKQLLGLNGSDSTKVLNTLIFNSFVFCQIEKINIFRGMFSSWIFLGVMVSTVGFQIIIIELLGAFASTVPLSWELWGLSVLIGFVSMPVAVVLKLIPVRKEEAFTAHHDGYEPIPSGPELA | 971 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 26477706 | 26485140 | - | Lsi03G015510.1 | Lsi03g01551 | 659301 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01551 | 971 | SUPERFAMILY | HAD-like | 395 | 801 | IPR036412 | - | |
Lsi03g01551 | 971 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 402 | 606 | IPR023299 | GO:0000166 | |
Lsi03g01551 | 971 | Gene3D | - | 393 | 741 | IPR023214 | - | |
Lsi03g01551 | 971 | SUPERFAMILY | Calcium ATPase, transduction domain A | 181 | 277 | IPR008250 | - | |
Lsi03g01551 | 971 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 148 | 434 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi03g01551 | 971 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 662 | 784 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi03g01551 | 971 | Pfam | E1-E2 ATPase | 179 | 374 | - | - | |
Lsi03g01551 | 971 | Coils | Coil | 545 | 565 | - | - | |
Lsi03g01551 | 971 | SFLD | p-type atpase | 378 | 748 | IPR044492 | - | |
Lsi03g01551 | 971 | PANTHER | CATION TRANSPORTING ATPASE | 4 | 955 | - | - | |
Lsi03g01551 | 971 | Pfam | Cation transporter/ATPase, N-terminus | 62 | 128 | IPR004014 | - | |
Lsi03g01551 | 971 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 398 | 404 | IPR018303 | - | |
Lsi03g01551 | 971 | Gene3D | - | 111 | 946 | - | - | |
Lsi03g01551 | 971 | Pfam | Cation transporting ATPase, C-terminus | 781 | 946 | IPR006068 | - | |
Lsi03g01551 | 971 | Pfam | Cation transport ATPase (P-type) | 452 | 536 | - | - | |
Lsi03g01551 | 971 | Gene3D | - | 406 | 601 | IPR023299 | GO:0000166 | |
Lsi03g01551 | 971 | SFLD | C1.7: P-type atpase like | 378 | 748 | - | - | |
Lsi03g01551 | 971 | PRINTS | H+-transporting ATPase (proton pump) signature | 555 | 573 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi03g01551 | 971 | PRINTS | H+-transporting ATPase (proton pump) signature | 696 | 712 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi03g01551 | 971 | PRINTS | H+-transporting ATPase (proton pump) signature | 728 | 753 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi03g01551 | 971 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 54 | 949 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Lsi03g01551 | 971 | SMART | Cation_ATPase_N_a_2 | 38 | 133 | IPR004014 | - | |
Lsi03g01551 | 971 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 4 | 955 | - | - | |
Lsi03g01551 | 971 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 62 | 949 | IPR023298 | - | |
Lsi03g01551 | 971 | Gene3D | - | 79 | 279 | - | - | |
Lsi03g01551 | 971 | PRINTS | P-type cation-transporting ATPase superfamily signature | 720 | 732 | - | - | |
Lsi03g01551 | 971 | PRINTS | P-type cation-transporting ATPase superfamily signature | 616 | 626 | - | - | |
Lsi03g01551 | 971 | PRINTS | P-type cation-transporting ATPase superfamily signature | 594 | 605 | - | - | |
Lsi03g01551 | 971 | PRINTS | P-type cation-transporting ATPase superfamily signature | 396 | 410 | - | - | |
Lsi03g01551 | 971 | PRINTS | P-type cation-transporting ATPase superfamily signature | 227 | 241 | - | - | |
Lsi03g01551 | 971 | PRINTS | P-type cation-transporting ATPase superfamily signature | 696 | 715 | - | - | |
Lsi03g01551 | 971 | CDD | P-type_ATPase_Ca_PMCA-like | 86 | 829 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01551 | Lsi-Chr3:26477706 | Lsi09g00868 | Lsi-Chr9:10096639 | 0 | dispersed | |
Lsi11g01706 | Lsi-Chr11:25213447 | Lsi03g01551 | Lsi-Chr3:26477706 | 1.33E-18 | dispersed | |
Lsi03g01551 | Lsi-Chr3:26477706 | Lsi01g00892 | Lsi-Chr1:7182041 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01551 | K01537 | - | csv:101206199 | 1774.6 |