Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01559 ATGGCTTCTTCGTCCTCTGATCCTGGCTTCAAACACGAACCCGGTGCCTGTAGCGCTGCTGCTGCCGCCGGAAGAGGAACGGCGGAAGCTTCCGAGGTTGTAATGGCGAATGATCAGCTTTTACTGTACAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCCAAAGAACGCATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCGATATACCGCGGAGTCACTAGAGATGGACATAAGAGGAATTTTTCGGATAATGTTGATCTGTCCGCAGCGAGAATTAATTACCTGACATTGCTTGTAATGTACGCCTGTTCTTTATCTTTACCTTCTTCTCTGCTGACTAGCGCCTGTGAATGGTTTGATGATATTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGTGTATCTGGGAGCATATGATGAAGAAGAGGCTGCTGCTAGGGCATACGATTTGGCTGCCTTAAAATACTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTAAGGAGAAAGAGCAGTGGTTTCTCCAGGGGAATATCCAAATATCGTGGTCTCTCAAGAAGTGGCTGGAGGTTTAAAGTCAGACATGTGGAATGTGTTGGTACATTGCACAATCGATGGGAGCCTTCATTTGGTCGTATGCCAGGCCCTGATTATGTTAACAGCATAAATTATGGTGCTGGAAATGATCAAGCAACTGAAAGTGAATTCGTCCACAGCTTCTGCATTGAAAGGAAGATTGACTTAACAAGTCACATTAAGTGGTGGGGGCCCAACAAAACTCGAACGGTCAGTGCTGGCTCAAAGTCATCAGAAGAAGACAAAAATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCACCCGTCCTACGGAGCCGTATGAGATGCCTTGTTTGGGTACAGTACATGGAGTAAAGAAGGCTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCGGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAACGAGAATGATGAGAACGAAAATAAAAACACTGTTAACAAGATAGATCATGGGAAAGTGGTTGAAACACATACAAGTCATGGTGGTGATCCCAGCGAGAGATACGGGGCTGCTTTCGAAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACAGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCGATTCACTGGACATCTCTCGTCTCTGTTCTTCCTACTGGACTTTCTCGTACAGCCGAGGTTAGCATATATACTGTCCTTATTTTTCAGGGTGAATTTGAGACGTCTTTTAGAAGGATGAAAGGCTATTCTATTCTCAAAGTTACGAAAACTGAAACCTCTTCGACTTACACTTTGTTTCGGCCTGAGGAATAA 1581 44.59 MASSSSDPGFKHEPGACSAAAAAGRGTAEASEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRDGHKRNFSDNVDLSAARINYLTLLVMYACSLSLPSSLLTSACEWFDDIRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSRSGWRFKVRHVECVGTLHNRWEPSFGRMPGPDYVNSINYGAGNDQATESEFVHSFCIERKIDLTSHIKWWGPNKTRTVSAGSKSSEEDKNSCAGEVGSELKALGQTTRPTEPYEMPCLGTVHGVKKAASKVSALSILSRSAAYKSLQEKALKLQEINNENDENENKNTVNKIDHGKVVETHTSHGGDPSERYGAAFETSGGLPLQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRTAEVSIYTVLIFQGEFETSFRRMKGYSILKVTKTETSSTYTLFRPEE 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26554340 26559390 - Lsi03G015590.1 Lsi03g01559 659309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01559 526 SMART rav1_2 130 196 IPR001471 GO:0003700|GO:0006355
Lsi03g01559 526 Coils Coil 374 402 - -
Lsi03g01559 526 SUPERFAMILY DNA-binding domain 130 191 IPR016177 GO:0003677
Lsi03g01559 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 82 - -
Lsi03g01559 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 129 483 - -
Lsi03g01559 526 Pfam AP2 domain 130 182 IPR001471 GO:0003700|GO:0006355
Lsi03g01559 526 ProSiteProfiles AP2/ERF domain profile. 125 190 IPR001471 GO:0003700|GO:0006355
Lsi03g01559 526 PANTHER BNAA03G19580D PROTEIN 23 82 - -
Lsi03g01559 526 PANTHER BNAA03G19580D PROTEIN 129 483 - -
Lsi03g01559 526 Gene3D AP2/ERF domain 128 192 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01559 Lsi-Chr3:26554340 Lsi06g01180 Lsi-Chr6:22096693 3.05E-46 dispersed
Lsi03g01559 Lsi-Chr3:26554340 Lsi01g00869 Lsi-Chr1:7000981 7.49E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25023 PF00847 AP2 6.20E-10 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01559 K09285 - csv:101206434 734.947