Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01564 ATGGCCGACGCCGACCAATTACCTCGCCGGAAACCCCTTGGGAATAAACGTGCCTCCGCCGCCAATAGAGACCCGGACTCCGCCACCACCACCGCCCCGGCTCCTTGTGGCGCATGCAAGTTTCTCAGAAGAAAATGTGTCAATGGATGTATCTTTGCACCACATTTTACCTCCGATCAAGGCGCCGCCCGATTCGCTGCCGTGCATAAGGTCTTCGGAGCCAGCAATGTATCGAAGCTGCTGCTGCATATTCCGGTCAGCCGTCGAAACGACGCTGTCGTTACCATTTCTTATGAGGCTCAAGCCAGACTATCCGACCCTGTCTATGGCTGTGTCTCTACTGTCCTTGCCCTACAACAACAGGTGGCATCTCTGCAGGCGGAGCTTGCGGCGGTTCAAACTCAATTGATAAGCAGCAGGTTGGCATTTGCAGCTGCAATTCAAAACTCACAGCCATCCCAAGTCGGAGTGCTGCAGCCAGCTTACTCTAACAACTCCTCCATCTCTGTCTCCGCCTCTACCTCCGCTCATAATGCAATCAATCTTAGTAGTTTTGCTTCCAATTATGATCTTCCGACCAAGACTGCCCCGTCTCCCCATCACCTAGAGCCTCTTCACCTCCCCCACCGACCGATCGAAGATGAGGAAGACGAGGAAAATAGCCAGTTGCCAGCCATCTTCGCCGATTAA 690 53.62 MADADQLPRRKPLGNKRASAANRDPDSATTTAPAPCGACKFLRRKCVNGCIFAPHFTSDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQTQLISSRLAFAAAIQNSQPSQVGVLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTKTAPSPHHLEPLHLPHRPIEDEEDEENSQLPAIFAD 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26624536 26628087 - Lsi03G015640.1 Lsi03g01564 659314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01564 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 19 221 - -
Lsi03g01564 229 MobiDBLite consensus disorder prediction 194 229 - -
Lsi03g01564 229 MobiDBLite consensus disorder prediction 1 31 - -
Lsi03g01564 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 19 221 - -
Lsi03g01564 229 Pfam Lateral organ boundaries (LOB) domain 35 133 IPR004883 -
Lsi03g01564 229 ProSiteProfiles LOB domain profile. 34 136 IPR004883 -
Lsi03g01564 229 Coils Coil 115 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01564 Lsi-Chr3:26624536 Lsi05g01004 Lsi-Chr5:17507404 7.14E-52 dispersed
Lsi03g01564 Lsi-Chr3:26624536 Lsi09g01900 Lsi-Chr9:27833481 7.16E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25025 PF03195 LOB 1.40E-37 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01564 - - csv:101215818 370.933