Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01573 ATGGGTTTCTTATCATCTCTCTCCAAACAGAGGGGTTTTATCATTTTCTTGAATCTCTCGTTTCTCTTAGTGGGTTGTGCTTTTTTGGCGAATCGGTTTCACTCCCCAGAATCCCATTTCCATGTCATTAACAAAAGCTCGAGAAGAATCCATGGCAACCCTCAGGAAGATTGCCAGAGTTTTCTTAGTTTAACTGAGTTTGAAGCTAAGTGCTCTGTTCTTAAATCCAACAATCCCTGTAACACACAAGGATACATAGATTATCTTTACATTTTCTATTGTCAGTATGGAAGTTTTAGCATCCTGGGCTACACGCTGTTGTTTTTGTGGCTTCTTTTGTTGTTCTATCTTTTGGGTAACACTGCTTCTGAATACTTTTGCTCTTCCCTTGAGAGCTTGTCAAAATTGTTGAATCTATCCCCAACTATTGCTGGTGTTACTCTGCTTTCTCTTGGCAATGGGGCACCTGATGTTTTTGCCAGCCTTGTTGCTTTCATGGGGGATGGGACTAGTGATATTGGCTTGAATACTGTTCTTGGCGGAGCCTCGTTTGTTACCTGCGTCGTCGTCGGAATCATTAGCATTTTGCTGCGTCGTCGACAGATTAAGGTGAATAGGTCTGCCTTCATTAGAGATGTTTTGTTCTTCCTCTTGGTTCTTTTGTCTGTTTTCTTGATATTGCTTCATGGTCATATCAATCTGTGGGGTTCCATTGGCTTTTCTTCCATGTATATTGTTTATGTTTTGGTTGTTTATGTCTCCCATGCCCAATGGTTGAGTTTTAGAAGTGAATTTTGCGAACCCCTTTTGAAAGAACCACCGAAGGATGAATTTGAGGATCAAAATGAACCACGGGACAACGGTGACAATGATGATGTTAGAATCGATGTATATGATCTCTGTTTTTGTCCAAGATTATCACCTTCTTGTCTTTTTTTCCTTCGCATTCTTGAGATTCCTCTTTACATGCCTAGAAGATTGACAATTCCAGCCATAGCTGAAGAAAACTGGTCTAGACCATTTGCAGTTGCTTCAGTGACATTGGCCCCCCTTCTCTTATCTCTTCTATGGGCGTTTCACCACCAGGGTGAGCCGTCGCAGTCGAACCTGATCATCTGTGTCATTGCTTCGTTGCTCGGAGTTAGTTTTGGAATTGTTGCATTTGCGACGACGGAGAATTCAAGCCCACCAAAGAAGTGCCTATTCCCTTGGCTTGCAGCTGGCTTCACCATGAGTTTAACATGGAGTTATATTGTAGCTCAGGAACTGGTAGGCCTATTAGTTTCACTTGGCTACATAATGGGCATAAGCCCTTCAATCCTAGGACTTACCTTCCTGGCTTGGGGAAACTCTCTAGGGGATTTGGTTGCCAATGTGACCATGGCCTTGAACGGCGGGCAGCGAGGTGCCCAAATTGCCATCTCCGGCTGCTATGCTGGCCCCATCTTCAACACTCTGTTCGGCCTCGGGATGTCTCTTGTTGGCGCTTCGTGGAAGAAGTATCCGCAGCCGGTCGCCATCCCTCCGGACCCTTATGTCATGGAGACATTAGGGCTGTTGGTAGGAGGATTGCTTTGGGCACTTGTGGCTTTGCCAAGGAGAGAGATGAGGCTTGATGCTGTCTTGGGAGGAGGTCTTCTGGCTATCTATTTAACCTCTTTGCTCTTAAGGCTTTTGCAAGCTTTTGGTTCTTCCCATTAG 1701 44.68 MGFLSSLSKQRGFIIFLNLSFLLVGCAFLANRFHSPESHFHVINKSSRRIHGNPQEDCQSFLSLTEFEAKCSVLKSNNPCNTQGYIDYLYIFYCQYGSFSILGYTLLFLWLLLLFYLLGNTASEYFCSSLESLSKLLNLSPTIAGVTLLSLGNGAPDVFASLVAFMGDGTSDIGLNTVLGGASFVTCVVVGIISILLRRRQIKVNRSAFIRDVLFFLLVLLSVFLILLHGHINLWGSIGFSSMYIVYVLVVYVSHAQWLSFRSEFCEPLLKEPPKDEFEDQNEPRDNGDNDDVRIDVYDLCFCPRLSPSCLFFLRILEIPLYMPRRLTIPAIAEENWSRPFAVASVTLAPLLLSLLWAFHHQGEPSQSNLIICVIASLLGVSFGIVAFATTENSSPPKKCLFPWLAAGFTMSLTWSYIVAQELVGLLVSLGYIMGISPSILGLTFLAWGNSLGDLVANVTMALNGGQRGAQIAISGCYAGPIFNTLFGLGMSLVGASWKKYPQPVAIPPDPYVMETLGLLVGGLLWALVALPRREMRLDAVLGGGLLAIYLTSLLLRLLQAFGSSH 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26709464 26711164 - Lsi03G015730.1 Lsi03g01573 659323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01573 566 Gene3D - 139 263 IPR044880 -
Lsi03g01573 566 Gene3D - 342 558 IPR044880 -
Lsi03g01573 566 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 6 564 - -
Lsi03g01573 566 Pfam Sodium/calcium exchanger protein 108 252 IPR004837 GO:0016021|GO:0055085
Lsi03g01573 566 Pfam Sodium/calcium exchanger protein 405 556 IPR004837 GO:0016021|GO:0055085
Lsi03g01573 566 PANTHER CATION/CALCIUM EXCHANGER 2 6 564 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01573 Lsi-Chr3:26709464 Lsi06g00344 Lsi-Chr6:3798099 2.71E-138 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01573 K13754 - csv:101204766 988.408