Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g01597 | ATGGTTATGGCTGCCGATTCTCAATTCCATGTTCTTGCCGTCGATGATAGCCTCATAGATAGAAAACTCATCGAAAGGCTTCTCAAAACCTCCTCCTATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTAGGTTTGATTCAAGAACATCAACATACAAACTTCAAATCCCCTTCTAATTCTACTTCTTTTTCCTCCTCCAACAATCATCATCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGCATGCCTGGAATGACTGGCTTCGATTTGCTCAAGAAAGTTAAGGAATCAACATCGCTTAGAAACATACCAGTGGTGATAATGTCATCAGAAAACGTACCTTCGAGAATCAACAGATGTTTGGAAGAAGGCGCGGAAGAGTTCTTCCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAATTGAAGGAAGATCAAAATCAAGAAGAAGAAGAAGAAGAAACAACAGAGATCGAATTGGAATCGGTAGAAGAAGAAGAAGAAGAAGAAGAGTTTGAGTTTGAGATGAAGAGTAAGAAGAGAAAGGGAGGTATGGATGAAGAAAGTGTGAAGGAGGAGAGACGAAGAAGAAGAAGATTCGATAACAATGGCGTCGCGACTGTGATTTGA | 675 | 40.44 | MVMAADSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQHTNFKSPSNSTSFSSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESTSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLKEDQNQEEEEEETTEIELESVEEEEEEEEFEFEMKSKKRKGGMDEESVKEERRRRRRFDNNGVATVI | 224 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 26990232 | 26991805 | - | Lsi03G015970.1 | Lsi03g01597 | 659347 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g01597 | 224 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR9 | 3 | 212 | - | - | |
| Lsi03g01597 | 224 | MobiDBLite | consensus disorder prediction | 162 | 187 | - | - | |
| Lsi03g01597 | 224 | MobiDBLite | consensus disorder prediction | 156 | 224 | - | - | |
| Lsi03g01597 | 224 | CDD | REC_typeA_ARR | 11 | 148 | - | - | |
| Lsi03g01597 | 224 | Gene3D | - | 10 | 222 | - | - | |
| Lsi03g01597 | 224 | Coils | Coil | 154 | 188 | - | - | |
| Lsi03g01597 | 224 | MobiDBLite | consensus disorder prediction | 188 | 217 | - | - | |
| Lsi03g01597 | 224 | ProSiteProfiles | Response regulatory domain profile. | 10 | 153 | IPR001789 | GO:0000160 | |
| Lsi03g01597 | 224 | SMART | REC_2 | 9 | 148 | IPR001789 | GO:0000160 | |
| Lsi03g01597 | 224 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 3 | 212 | IPR045279 | GO:0009736 | |
| Lsi03g01597 | 224 | Pfam | Response regulator receiver domain | 11 | 142 | IPR001789 | GO:0000160 | |
| Lsi03g01597 | 224 | SUPERFAMILY | CheY-like | 8 | 164 | IPR011006 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi01g01790 | Lsi03g01597 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g01597 | Lsi-Chr3:26990232 | Lsi04g00507 | Lsi-Chr4:4705253 | 2.05E-55 | dispersed | |
| Lsi04g00029 | Lsi-Chr4:449084 | Lsi03g01597 | Lsi-Chr3:26990232 | 1.29E-50 | transposed | |
| Lsi04g01015 | Lsi-Chr4:11453891 | Lsi03g01597 | Lsi-Chr3:26990232 | 6.83E-53 | transposed | |
| Lsi04g01100 | Lsi-Chr4:13441528 | Lsi03g01597 | Lsi-Chr3:26990232 | 1.14E-14 | transposed | |
| Lsi08g00441 | Lsi-Chr8:12034744 | Lsi03g01597 | Lsi-Chr3:26990232 | 5.32E-43 | transposed | |
| Lsi09g00795 | Lsi-Chr9:9086452 | Lsi03g01597 | Lsi-Chr3:26990232 | 2.68E-75 | transposed | |
| Lsi10g00836 | Lsi-Chr10:11866514 | Lsi03g01597 | Lsi-Chr3:26990232 | 2.36E-20 | transposed | |
| Lsi01g01790 | Lsi-Chr1:17377008 | Lsi03g01597 | Lsi-Chr3:26990232 | 4.60E-71 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25027 | PF00072 | Response_reg | 6.00E-17 | CL0304 | Lsi | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g01597 | K14492 | - | csv:101220810 | 323.553 |