Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01615 ATGGGTAGTAGAACAGTGAAGATTGGTGCAGACGATTTAAACAAAACGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACGGCCAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATGTCAGACTTAAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCCAATAGTTCGACTCTGAACAACAACATCCAATTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGGTGTCATGGGGTCTCAACCACTGCCATTACAGAAAGAATCAAATCCAAATTTGGTTTCTACTTCTGGTGGTCCTCGTGAAAATTGGGGAGAGTCTAATATGGCAGATACCAGCACAAGAACTGATACCTCCACAGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCACGGAAACTCACTTGTCGCATACGATTCTAGCAACAAATCAAAAGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGCCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGACTGAAGCTTACTCAGCTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAGGCTCATTCAATGAGTGGGAATGGGGCCCTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGACTGATGAATGAGCTTAGAGCTGCAGTTAATTCACATGCGGGTGACACTGAACTTCGTACTATCGTAGATAATGTGACTACACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATTTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGCTCATCCGAGATCCTAAAGCTTCTTGTAAACCAATTAGAGCCTTTGGCTGAGCAGCAGTTAATGGGCATCTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCTCAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGGCAGTGCCACACCTGCAACGTCGGGGTCGTCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGTCAGGCTGATAATCTTCGTCAACAAACCCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTTGCAATAAACGACTACTTCTCCCGCCTTAGAGCCCTCAGTTCTCTGTGGCTTGCACGGCCACGAGATTGA 1413 45.22 MGSRTVKIGADDLNKTVNGMPSFVSSMPTANNSMGAEGSSIPSSRMSDLRTLEQTLGFHIEDVDLTRNPLYNQIKSNSSTLNNNIQFGSLIKPLASTDVNLPTGVMGSQPLPLQKESNPNLVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDHGNSLVAYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVNQLEPLAEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASGSATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27278710 27286637 + Lsi03G016150.1 Lsi03g01615 659365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01615 470 MobiDBLite consensus disorder prediction 145 164 - -
Lsi03g01615 470 SUPERFAMILY Leucine zipper domain 183 226 IPR046347 GO:0003700|GO:0006355
Lsi03g01615 470 Pfam Seed dormancy control 266 340 IPR025422 GO:0006351|GO:0043565
Lsi03g01615 470 Gene3D - 182 234 - -
Lsi03g01615 470 Pfam bZIP transcription factor 182 223 IPR004827 GO:0003700|GO:0006355
Lsi03g01615 470 SMART brlzneu 179 242 IPR004827 GO:0003700|GO:0006355
Lsi03g01615 470 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700|GO:0006355
Lsi03g01615 470 Coils Coil 202 229 - -
Lsi03g01615 470 CDD bZIP_HBP1b-like 183 234 - -
Lsi03g01615 470 MobiDBLite consensus disorder prediction 103 184 - -
Lsi03g01615 470 ProSiteProfiles DOG1 domain profile. 248 467 IPR025422 GO:0006351|GO:0043565
Lsi03g01615 470 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 63 470 - -
Lsi03g01615 470 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
Lsi03g01615 470 PANTHER TRANSCRIPTION FACTOR TGA9 63 470 - -
Lsi03g01615 470 MobiDBLite consensus disorder prediction 110 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01615 Lsi-Chr3:27278710 Lsi04g00016 Lsi-Chr4:217909 0 dispersed
Lsi08g01053 Lsi-Chr8:19154454 Lsi03g01615 Lsi-Chr3:27278710 6.28E-14 dispersed
Lsi03g01615 Lsi-Chr3:27278710 Lsi10g01166 Lsi-Chr10:15933908 1.93E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25028 PF14144 DOG1 8.30E-30 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01615 K14431 - csv:101219149 855.514