Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01618 ATGATGGTTGGTATACCATTGAGAGAGATGGTCCGAGTGATGAAATTAGAATCAGTGATGAACGTAGACATTGAAATTGGGATGAACCAAGGGTATAGAGTAAGAACTTCATATGTATTTTGCAAACTAGAGGTACCATATTCTTCAGAAGGAAATATAGCTGGTTTTGGAACCGCCGCTGCTTTATCTGATAGATACATTTCTTTTGAGAGAAATAACCTTGCAACATGGTCGTCCACTGGGATTTATATTAGTAGTCATGGTCTATCTTCACAAGCTGGTGCTGAGAACAGTGGAGATGAAGATAACGTGGAAGATGGATTTTCTGAACTTGACGAAACACTTCCAAGCACTAGTCCACTCGAAGATAGTAAGGCAGCTGATGATAATGAAGAGGAACTACCTTCTGGATCAGAAATTGATGATGATGATGATGGGACTCAAAATGAACTGGATTTACCTGAGGTAGAAACTGAACTTGCTGAAAAGATATCAACAAAATGGGCTCCTTCAGAGCTGTTCAAGGCTATTTGGAGTGCTCCAGGTTTATCTGTTCCTAGTGTACTTGATAAGTGGGTCAGTGAAGGAAAAGAAATAAACCGGGCTGAAATCTCTCTTGCCATGCTCAATCTTCGTAGACGTCGAATGTTTGGGAAGGCTTTGCAGTTTTCAGAGTGGTTGGAAGCAAGCGGGCAACTCGAATTTATTGAGAGAGATTATGCTTCTCGCCTTGACTTGATTGCAAAGGTACGGGGTCTCCATAACGCAGAGAGTTACATTGCTAAAATCCCAAAGTCGTTCCAAGGGGAGGTGGTATACCGAACTCTTTTGGCTAACTGTGTGATCGCCAACAATGTAAAAAAAGCAGAGGAAATATTTAACAAAATGAAGGACCTTGGATTCCCAATCACAGCATTTGCTTGCAACCAGTTGCTTCTTCTTCACAAGAGGCTTGACAAGAGGAAAATAGTCGACGTTTTGTTGTTGATGGAGAAAGAAAATGTCAAGCCGTCTCTGTTTACTTACAAAATCTTAATAGATGTTAAAGGCTTATCAAATGACATGATAGGGATGGAACAAGTTGTTGATACAATGAAGGCTGAAGGAATTAAACTTGATGTTACTGTACTTTCCATATTAGCTAAGCACTATGCTTCAGGTGGGCTTAAAGACAAAGCCATGGCCATTTTAAAGGAGATGGAAGATGTTAACTCCAAAGGTTCTCAATGGCCTTGCAGAATTTTACTTCCGCTCTATGGAGAACTCCAAATGGAAGATGAAGTGAGGAGGCTCTGGAAGATCTGCGAGTCAAATCCTCGTATCGAAGAATGCATGGCTGCCATTGTTGCTTGGGGAAAGTTGAAGAACATCCCGGAAGCAGAGAAAATTTTTAATAGAGTTGTAAAAACATGGAAAAAGCTGACCCCAAAACAATATACTACCATGTTGAAGGTTTATGCAGACAATAAGATGCTGACGAAGGGCAAGGAACTAGTCAAGCAGATGGCAGACAACGGTTGCCACATTGGTCCGTTGACATGGGATGCAGTTGTGAAGCTCTATGTGGAAGCTGGGGAGGTAGAAAAAGCAGACTCTTTCTTGCGTAAGGCTATTCAACAAAACCAGAAGAAGCCATTGTTTACCTCATACATGGTTATCATGGATCAGTATGCAAGGAAGGGGGATGTCCACAATACAGAGAAAATCTTTCATAAGATGAGACTCGATGGTTACGTGGCTCGATTCAGCCAATTTCAAACTCTAATACAGGCATACCTTAACGCCAAGGCTCCGGCCTATGGTATGAAAGAGAGAATGAAGGCAGATGATGTATTTCCAAACAAAGCTTTGGCAGGAAAATTAGCCCAAGTTGATGCTTTCAGGAAGACAGCAGTGTCAGATTTGCTTGACTGA 1914 41.48 MMVGIPLREMVRVMKLESVMNVDIEIGMNQGYRVRTSYVFCKLEVPYSSEGNIAGFGTAAALSDRYISFERNNLATWSSTGIYISSHGLSSQAGAENSGDEDNVEDGFSELDETLPSTSPLEDSKAADDNEEELPSGSEIDDDDDGTQNELDLPEVETELAEKISTKWAPSELFKAIWSAPGLSVPSVLDKWVSEGKEINRAEISLAMLNLRRRRMFGKALQFSEWLEASGQLEFIERDYASRLDLIAKVRGLHNAESYIAKIPKSFQGEVVYRTLLANCVIANNVKKAEEIFNKMKDLGFPITAFACNQLLLLHKRLDKRKIVDVLLLMEKENVKPSLFTYKILIDVKGLSNDMIGMEQVVDTMKAEGIKLDVTVLSILAKHYASGGLKDKAMAILKEMEDVNSKGSQWPCRILLPLYGELQMEDEVRRLWKICESNPRIEECMAAIVAWGKLKNIPEAEKIFNRVVKTWKKLTPKQYTTMLKVYADNKMLTKGKELVKQMADNGCHIGPLTWDAVVKLYVEAGEVEKADSFLRKAIQQNQKKPLFTSYMVIMDQYARKGDVHNTEKIFHKMRLDGYVARFSQFQTLIQAYLNAKAPAYGMKERMKADDVFPNKALAGKLAQVDAFRKTAVSDLLD 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27294493 27297490 - Lsi03G016180.1 Lsi03g01618 659368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01618 637 TIGRFAM PPR: pentatricopeptide repeat domain 479 508 IPR002885 -
Lsi03g01618 637 TIGRFAM PPR: pentatricopeptide repeat domain 271 304 IPR002885 -
Lsi03g01618 637 PANTHER OS01G0280400 PROTEIN 42 637 - -
Lsi03g01618 637 MobiDBLite consensus disorder prediction 90 150 - -
Lsi03g01618 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Lsi03g01618 637 Pfam Pentatricopeptide repeat domain 307 349 IPR002885 -
Lsi03g01618 637 Pfam PPR repeat 271 301 IPR002885 -
Lsi03g01618 637 Pfam PPR repeat 513 536 IPR002885 -
Lsi03g01618 637 Pfam PPR repeat 549 577 IPR002885 -
Lsi03g01618 637 Pfam PPR repeat 479 507 IPR002885 -
Lsi03g01618 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Lsi03g01618 637 Gene3D Tetratricopeptide repeat domain 183 317 IPR011990 GO:0005515
Lsi03g01618 637 Gene3D Tetratricopeptide repeat domain 318 433 IPR011990 GO:0005515
Lsi03g01618 637 SUPERFAMILY HCP-like 380 572 - -
Lsi03g01618 637 Gene3D Tetratricopeptide repeat domain 441 633 IPR011990 GO:0005515
Lsi03g01618 637 PANTHER OS12G0527900 PROTEIN 42 637 - -
Lsi03g01618 637 MobiDBLite consensus disorder prediction 126 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01774 Lsi-Chr1:16706800 Lsi03g01618 Lsi-Chr3:27294493 1.46E-31 dispersed
Lsi03g01618 Lsi-Chr3:27294493 Lsi02g00745 Lsi-Chr2:6846497 1.52E-48 dispersed
Lsi03g01616 Lsi-Chr3:27286377 Lsi03g01618 Lsi-Chr3:27294493 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01618 - - cpep:111800051 1033.09