Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01619 ATGGGAAAGAGTGAAGAAGAACAGCCGCTGCCGGTTGGAGTGAGCTCCGCTGAGCTTTCTGACCGGAATGTGGAGAGCAGATGCGGCGGCGGTGGGTGCTCTGGGATTCGTAGACTGATTGCGGTGAGATGTGTCTTCTTCCTGTTACTGTCGGCGGCTGTGTTTCTTTCTGCTATTTTTTGGCTGCCACCATTCCTATCCTATGGAAACTGGCCGGATCGGCCTATTGGTTCTGCGTATAGAGATCATGAAATAGTAGCAAGTTTTCATGCTTGGAAGCCAGCTCCTTTTCTGGAAAACCATATTTTTGAGCTTGAGGATAACATTTTTGGAGAAATACCCGTACCTTTTGTCAAGGTGGCTATCCTCTCACTACAATCATTAGGTGGACCAAACGTAACAAAAATTGTTTTTGCGGTAGATTCTGATGCCAAGTATTCAAAAATTCCCCCAACATCTCAAAGTTTGATCAAGGAAACCTTTGAAACATTGGTTATAAATGAACCTCCTCTGAGATTGAATGCATCATTATTTGGCAATACATCCTTATTCGAGGTGTTGAAATTTCCTGAAGGAATTACTATTATTCCTCCTCAGAGTGCATTTCCTCTGCAGGCGCCACAGATCTATTTCAATTTCACATTAAATTATTCTATTTATCAAATTCAAGTGAATTTTGATGATCTTACCAGCCAGCTGAGGTCAGGATTACATCTATCTTCTTATGAGAATTTATATGTTAGCCTATCGAATGAAAGAGGTTCAACAATGCATCCCCCCACTATTGTCCAGTCATCTGTTCTGATGGCAATTGGGACTAATTCATCGAAACAAAGGCTAAAACAGTTGGCTCAAACCATCACAAATTCTCATTCAGGAAACCTTGGCCTGAATAACACTATATTTGGTAAGGTCAAGCAGGTGCGTCTTTCATCAGTCCTAAACCACTCTCTTGGTGGTGGTGGAAGTGCACGGTCACCTTCACCTGCGCCTTTGCCTTATTCTCACCACCACCACCACCACCACCATCACCATCACCACCACCATCACCGCCATCATCACCATCACCACCATCACCACCACTACAATCAGGTTGCTGCATATTCACCCAGCCCTGGAACAGAGGAGCACAAACATGCACTGAAGAATGGGGTATCATCTGCTCCCGAAGCTGGTCCATCCCCAGTGGGAAGTCCAACTTCAGAAAAAAGAAAGGATGAATCAACTCCGCCTGCTTTTCAATATGGATATAAAAGGTCTTCAAGAAAAGTCAGAAAACAATCTCATTTAGGCCCTATTTCTTCTCCAAGCAGTCCTCCATCGTCACCATACTTACGAGTAGGCCTGCCAGCACCTGTTTCTGATTCTATTTCTGCTTCAAGTCCACTGTCAGGTGTAGTTCTATCTAGTGTACAGCCTCCTAATACAGGCAGTGGACATTCAGAAAATTTTGAAAGAAGCGCCCATTCAGTCTTACCACCACAATTTTCTTGTTGTAATCTAACATGCTTGTTCACAGCTTCTGTAGGTGTTCGTGTTTATACCATTCGATGGACACTTGCGCTATTTCTTCTCATTAGAGATGCGATGGCGAGACGGACGCAAAGGCGTGCTCCTGCTAGAGTTGATATAATGATGTTTCATTGTATGTAA 1653 43.74 MGKSEEEQPLPVGVSSAELSDRNVESRCGGGGCSGIRRLIAVRCVFFLLLSAAVFLSAIFWLPPFLSYGNWPDRPIGSAYRDHEIVASFHAWKPAPFLENHIFELEDNIFGEIPVPFVKVAILSLQSLGGPNVTKIVFAVDSDAKYSKIPPTSQSLIKETFETLVINEPPLRLNASLFGNTSLFEVLKFPEGITIIPPQSAFPLQAPQIYFNFTLNYSIYQIQVNFDDLTSQLRSGLHLSSYENLYVSLSNERGSTMHPPTIVQSSVLMAIGTNSSKQRLKQLAQTITNSHSGNLGLNNTIFGKVKQVRLSSVLNHSLGGGGSARSPSPAPLPYSHHHHHHHHHHHHHHHRHHHHHHHHHHYNQVAAYSPSPGTEEHKHALKNGVSSAPEAGPSPVGSPTSEKRKDESTPPAFQYGYKRSSRKVRKQSHLGPISSPSSPPSSPYLRVGLPAPVSDSISASSPLSGVVLSSVQPPNTGSGHSENFERSAHSVLPPQFSCCNLTCLFTASVGVRVYTIRWTLALFLLIRDAMARRTQRRAPARVDIMMFHCM 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27300663 27306049 + Lsi03G016190.1 Lsi03g01619 659369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01619 550 MobiDBLite consensus disorder prediction 316 447 - -
Lsi03g01619 550 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 526 - -
Lsi03g01619 550 MobiDBLite consensus disorder prediction 334 363 - -
Lsi03g01619 550 PANTHER F20B24.21 1 526 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01756 Lsi03g01619 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01755 Lsi-Chr1:16339418 Lsi03g01619 Lsi-Chr3:27300663 3.40E-14 dispersed
Lsi01g01756 Lsi-Chr1:16339827 Lsi03g01619 Lsi-Chr3:27300663 9.62E-100 dispersed
Lsi03g01619 Lsi-Chr3:27300663 Lsi05g00186 Lsi-Chr5:2653122 1.21E-50 dispersed
Lsi07g00855 Lsi-Chr7:9655431 Lsi03g01619 Lsi-Chr3:27300663 2.73E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01619 - - csv:101213172 780.015