Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01625 ATGAAGGGAACGGATATGGGTTTGGGAATTGTGGATCCAAACACGTGCATCAGGGGCTGCTGCTCCAGCAAATCGATTCCTCTTCATCTTCAACCTTCCGCATTTACGTTGCTCTCCCCAATTGCGCGAGGGGCCGAGAGTATTGTGTATGAAGGAAGGTTGGATGGTAAAAAAGTTGCTGTAAAGAAGCCCACCTTGTCTACTTCTGAGGAATTGGACAAGTTTCATAAGGAGCTCCATGAATTAGATCATCCAGGCATAGTAAAACTGGTTGCAGCAAATGCGAAGCCACCTAACTACATGTTTTTCTTTGAATTCTACGAGTCTCCAAATCTTGCGGAGAAATTGCATGCTGAAGAATGGAATCCAAGTATCAATCAGGTGCTTATGATCACTCTAGAGTTAGCAAAGGCTTTGCAGTATTTGCATAACTTGGGGATTGTACATAGAGATGTGAAACCAGCAAATGTTCTTCTTGACAAAGATTTGCATCCATACTTGGCTGATTTTGGTTTAGCAATATACGGGAAATATCTTAAAGAAATTTCTGCTGAAAATTGGAAGTCATCTGGCAAGCCAACAGGTGGTTTCTATAAGAAAAGCATGGTTGGGACACTCATTTATATGGCCCCTGAGATATTGAAGAAGGAAATACATACAGACCTATCAGATGTCTATAGTTTTGGCATTCTAATGAATGAGCTTTTGACTGGTGTTGTTCCATATACTGATCTTCGTACTGAAGCACAGGCCCACACTGTTCTGGAAATGAATTATACAGAGCAGCTCCTTACGGCAGCTATTGTTTCAGATGGCTTGCGGCCAGCTCTTCCTAGTGATGAATCTGGCACACCATCTAGGTTGTTATCACTTATACGGAGGTGCTGGGATGCAAATCCTAAAAACAGACCATCTTTTTCTGATTTAGTTATAGACTTGGAGTCAATTTGGGAGAATAGAAAGGGTCTAGAATCTGTCACCCCTATACAACCTGACTTGGGTGGTAGGCTTGGTAATGCTAATGAACATGATTGTGCGTATCGAGAAGATATTAACTGGTCAAATCAGGGAGAACATTGTTCTCAAAAGTCATCTGATGCAGATGGGTGTGCTTTGAATGAGTGGCTTGATTCCTCAACTGGCCAATTGGCATACCGCCCAACACTTTCTTGGGGATCCTTCTCCACCTGTGGGAGGAGGGAGAACATGGAGGACTCTCATTTCCTTTTGCCTCACTTCTGCAGTGAAGAGGACATCCATGTCTTTGGGATCTTTGATGGTCATAGAGAGGGAAGTGGATGGGATTCAAACATTTCAGCAACCATTAATGAGAGTGGTTGGGATGAAAGTTACATAACAGGAATGGAAGGAATTAGGAAAAATGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCAATTCCTGGATTCTTGCGATCATCTTTTTCCACAAGAAGGTTTTCATTCTTTCTTTTAAGATTTTCCATTCTTCACCTTTCGATGGAATCTACCGTGTGCAGTCCTGCAGATGCATTAATGGAAGCATTTGTAAAAACAGACATTGAGTTTAGAAAAGAACTTGAGTTATTTCGCAAATCCAAGAAAGTTAAACAGAAAGACTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAATTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGTAGGACAATATTGTGTCGGGCTGGGGATCCCATTGTTTTAAGTAAGGATCATGTTGCTAGTTGTCTTGAAGAGAGAGAGCGTGTCATCAGTGCTGGAGGACAGGTCACTCGATCAATTGGCGATGATGATCTGAAGCCAGCTGTGACTGCAGAACCCGAGATAACAGAAACTGTTTTGACATCACAGGATGATTACCTGGTTATGGCTAGTGATGGATTGTGGGATGTTCTTAGCAACTCTGAGGTAGTTGGTATAATCAGGGACACTGTCAAAGATCCAGGAATGTGCTCGAAACGACTCGCAACGGAAGCGGCTGCTCGGGGCAGCAACGATAACATCACGGTAATTGTTGTATTTTTACATCCAGTATCTACAGTAGAGAGAATTTATTAA 2085 42.64 MKGTDMGLGIVDPNTCIRGCCSSKSIPLHLQPSAFTLLSPIARGAESIVYEGRLDGKKVAVKKPTLSTSEELDKFHKELHELDHPGIVKLVAANAKPPNYMFFFEFYESPNLAEKLHAEEWNPSINQVLMITLELAKALQYLHNLGIVHRDVKPANVLLDKDLHPYLADFGLAIYGKYLKEISAENWKSSGKPTGGFYKKSMVGTLIYMAPEILKKEIHTDLSDVYSFGILMNELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLTAAIVSDGLRPALPSDESGTPSRLLSLIRRCWDANPKNRPSFSDLVIDLESIWENRKGLESVTPIQPDLGGRLGNANEHDCAYREDINWSNQGEHCSQKSSDADGCALNEWLDSSTGQLAYRPTLSWGSFSTCGRRENMEDSHFLLPHFCSEEDIHVFGIFDGHREGSGWDSNISATINESGWDESYITGMEGIRKNGAAAAEFSAQAIPGFLRSSFSTRRFSFFLLRFSILHLSMESTVCSPADALMEAFVKTDIEFRKELELFRKSKKVKQKDWHPGCTAVVALIVRDRLFVANAGDCRTILCRAGDPIVLSKDHVASCLEERERVISAGGQVTRSIGDDDLKPAVTAEPEITETVLTSQDDYLVMASDGLWDVLSNSEVVGIIRDTVKDPGMCSKRLATEAAARGSNDNITVIVVFLHPVSTVERIY 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27358811 27379096 - Lsi03G016250.1 Lsi03g01625 659375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01625 694 SMART serkin_6 35 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01625 694 Pfam Protein phosphatase 2C 464 677 IPR001932 -
Lsi03g01625 694 ProSiteProfiles PPM-type phosphatase domain profile. 390 684 IPR001932 -
Lsi03g01625 694 PANTHER - 6 431 - -
Lsi03g01625 694 SUPERFAMILY Protein kinase-like (PK-like) 29 327 IPR011009 -
Lsi03g01625 694 SUPERFAMILY PP2C-like 384 686 IPR036457 -
Lsi03g01625 694 PANTHER PROTEIN PHOSPHATASE 2C 6 431 IPR015655 GO:0004722|GO:0006470
Lsi03g01625 694 Gene3D - 382 691 IPR036457 -
Lsi03g01625 694 CDD PP2Cc 392 684 IPR001932 -
Lsi03g01625 694 Pfam Protein kinase domain 38 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01625 694 SMART PP2C_SIG_2 450 684 IPR001932 -
Lsi03g01625 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Lsi03g01625 694 Gene3D Transferase(Phosphotransferase) domain 1 22 329 - -
Lsi03g01625 694 SMART PP2C_4 380 682 IPR001932 -
Lsi03g01625 694 PANTHER PROTEIN PHOSPHATASE 2C 461 694 IPR015655 GO:0004722|GO:0006470
Lsi03g01625 694 ProSiteProfiles Protein kinase domain profile. 35 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01625 694 PANTHER - 461 694 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01625 Lsi-Chr3:27358811 Lsi01g00468 Lsi-Chr1:3908545 1.98E-38 dispersed
Lsi03g01625 Lsi-Chr3:27358811 Lsi02g00366 Lsi-Chr2:3140797 3.03E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83500 PF00069 Pkinase 3.60E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01625 - - csv:101217487 1104.35