Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01626 ATGCCAAATCTGCTGATGGACGAGGGTGCATTGGTCACTGCAAAACCTTGGGCGCGAGCCGCCATCGGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAAAAAATCTGCTGATGGACATCGGATTAGTTGCAGTTACCGATAATGATAGGCTTCTCACATGGATTCACCCACCAAACGGGTGGATCCACTGCAATTTTGCAAGCAATTTTTGTTCCAAGGTTCTTACAAGGGACATTCCATGGGAGACATACATGACTACTAAACTTATCAGTGGAACAAGCCTTCAGCTGTTAAGGCGTTATGACAACAGACCAGAGAGTTACAGGGCACAGTTATTGGATGATGATGGTCCAGCATATGTTCGGGTATTTGTTAGCATTTTACGCGATATATTTAAGGAAGAAACAGTGGAATATGTTCTAGCATTAATCGATGAAATGCTTACAGCAAACCCAAAAAGAGCAAGATTGTTCCATGATCCTTCTCTTGCAAACGAAGATACTTATGAACCTTTCCTAAGATTGCTTTGGAAGGGAAATTGGTTCATACAGGAGAAGAGCTGTAAAATACTTGCTCTGATAGTGAGTGCTAGACAGAAAACTCATGCTGGAAGTTTTGCAAATGATGATGCCTCAAACTCCAAGAGCAAAATTACTACCATTGATGATGTTTTGGATGGACTGGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCACATCCTAGTCGTGCTGTACAGACTTCTATCAATTGCCTTGCAACTCTGCTGAAAGAACCAAAGGTCAGATCCTCCTTTGTCCAGACGGATGGAGTGAAATTGCTTATTCCTTTGATTTCTCCTGCATCGACCCAACAATCTATTCAGCTTCTATACGAAACTTGTCTTTGTGTTTGGCTCTTATCATATTATGAGCCGGCAATTGAATTCTTGGCCACTTCTAGGACCCTTCCAAGACTCATCGACGTTGTCAAGAGTTCCACGAAAGAGAAGGTTGTCCGAGTTATTATTTTGACCTTGAGGAACTTACTCTACAAGGGGACATTTGGAGCTCAAATGGTGGGTCTCGGACTACCACAAATTGTTCAAAGTTTGAAATCACAAGCATGGAGTGATGAGGACCTTTTGGAGGCTTTGAATCAATTAGAAGAGGGGCTGAAAGATAACATCAAGAAACTAAGTTCTTTCGACAAGTATAAGCAAGAAGTCCTTCTCGGGCATCTTGATTGGTCTCCTATGCACAAAGATGTAAATTTCTGGCGAGAAAATATTACAAGCTTCGAAGAGAACGACTTGAAGATATTGAGGGTCCTAATCACCATTCTGGACAGTTCCAGTGATCCAAGGGCTCTAGCAGTTGCTTGTTTTGATCTTTCACAGTTCATTCAACACCATCCAGCTGGGAGAGTTATAGTAACAGACCTCAAGGCCAAGGAAAGAGTGATGAAACTGATGAATCATGAGAATGCTGAGGTTACAAAATATGCCCTCCTTTGCATTCAAAGGCTCTTTCTAGGTGCCAAGTATGCTAGCTTTCTGCAGGCTTAA 1551 42.04 MPNLLMDEGALVTAKPWARAAIGADLDGSSKYSKKNLLMDIGLVAVTDNDRLLTWIHPPNGWIHCNFASNFCSKVLTRDIPWETYMTTKLISGTSLQLLRRYDNRPESYRAQLLDDDGPAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDPSLANEDTYEPFLRLLWKGNWFIQEKSCKILALIVSARQKTHAGSFANDDASNSKSKITTIDDVLDGLVKWLCAQLKNPSHPSRAVQTSINCLATLLKEPKVRSSFVQTDGVKLLIPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEFLATSRTLPRLIDVVKSSTKEKVVRVIILTLRNLLYKGTFGAQMVGLGLPQIVQSLKSQAWSDEDLLEALNQLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDVNFWRENITSFEENDLKILRVLITILDSSSDPRALAVACFDLSQFIQHHPAGRVIVTDLKAKERVMKLMNHENAEVTKYALLCIQRLFLGAKYASFLQA 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27380578 27389299 + Lsi03G016260.1 Lsi03g01626 659376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01626 516 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 72 516 - -
Lsi03g01626 516 Pfam V-ATPase subunit H 72 387 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lsi03g01626 516 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 72 516 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lsi03g01626 516 CDD VATPase_H 73 510 - -
Lsi03g01626 516 PIRSF V-ATP_synth_H 59 515 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lsi03g01626 516 SUPERFAMILY ARM repeat 66 506 IPR016024 -
Lsi03g01626 516 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 462 469 IPR018506 GO:0020037
Lsi03g01626 516 Pfam V-ATPase subunit H 393 505 IPR011987 GO:0000221|GO:1902600
Lsi03g01626 516 Gene3D - 63 395 IPR011989 -
Lsi03g01626 516 Gene3D - 407 508 IPR038497 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01626 K02144 - csv:101217015 855.129