Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01627 ATGGTTCTCTCTCTCATCCTTCTCTCTCTCCTCCTCCTTCTCCTCGCTTACAACCTCTACAACCGCCTCCGGTTCAAGCTCCCACCAGGGCCACGGCCGCTTCCGGTGGTCGGAAACCTGTACGACGTCAAACCTGTCCGGTTCAGATGCTATGCGGAATGGGCCAAGCAGTACGGTCCGATCATATCGGTGTGGTTCGGGTCGACGCTGAACGTGGTGGTGTCGAACAAGGAACTGGCGAGGGAGGTTCTGAAGGAGCACGACCAGAGCCTAGCGGACCGGCACCGGAGTCGATCGACGGCGGCATTTAGCCGGAACGGGAAGGACCTGATTTGGGCGGATTATGGACCTCATTATGTGAAGAAGGATCGGAAGAACCATGGAAAGAGCTTGAAGCTGAGGGAGTTTCTGGGAGCAGTTTCATTCAACAACATCACAAGGCTCGCATTTGGGAAGAGATTTGTGAATTCCGATGGCGTTTTGGATGAACAGGGCTTGGAATTCAAGGCCATTGTCGCCAATGGCCTCAAGCTTGGCGCCTCCTTGGCCATGGCCGAGCACATCCCTTGGCTCCGCTGGATGTTCCCTCTCGAAGAAGAAGCCTTCGCCAAGCACGGCGCCCGTCGCGACCGCCTCACTCGAGCCATCATGGAAGAGCACACCAAAGCTCGCAACCTGAGCGGCAATGTCAAGAACCACTTCGTCGATGCTCTCCTCACTCTCAAAGACAAGTACGATCTCAGTGAAGACACCATCATTGGCCTCCTTTGGGATATGATCACAGCCGGCATGGACACGACAACCATTTCAGTGGAATGGGCGATGGCGGAGATCGTAAGAAACCCTAGAGTGCAAAAGAAGGTTCAGGAGGAACTAGACAATGCGATTGGAGTAGATCGGATCATGACAGAGAACGATTTCTCGAATCTTCCATATCTCCAATGTGTCGTAAAGGAGGCGATGAGATTACATCCACCGACGCCATTGATGCTGCCGCACCGATCCAACGCCAACGTGAAGATAGGCGGCTACGACATCCCCAAGGGCTCGAACGTGCACGTGAACGTATGGGCGGTGGCACGTGACCCAGCAGTGTGGAAGAACGCGGAGGAGTTCCGGCCGGAGCGGTTCTTAGAAGAGGATGTGGGCATGAAAGGGCACGATATGCGACTACTGCCGTTCGGAGCAGGGCGGAGGGTGTGCCCAGGGGCTCAGTTGGGGATTAATTTGGTGACGTCAATGTTGGGCCACCTTCTGCACCACTTCGAATGGACGCCGCCGCCGGGAATGAAGGCGGAGGAGATCGACATGTCGGAGAGCCCTGGATTGGCGTCGTACATGAAGACGCCTGTGCACGCTGTGGCCACTCCCAGGCTGCCTTCAGGACTGTACAAACGTGTGCCTGTGGACATGTAA 1416 55.79 MVLSLILLSLLLLLLAYNLYNRLRFKLPPGPRPLPVVGNLYDVKPVRFRCYAEWAKQYGPIISVWFGSTLNVVVSNKELAREVLKEHDQSLADRHRSRSTAAFSRNGKDLIWADYGPHYVKKDRKNHGKSLKLREFLGAVSFNNITRLAFGKRFVNSDGVLDEQGLEFKAIVANGLKLGASLAMAEHIPWLRWMFPLEEEAFAKHGARRDRLTRAIMEEHTKARNLSGNVKNHFVDALLTLKDKYDLSEDTIIGLLWDMITAGMDTTTISVEWAMAEIVRNPRVQKKVQEELDNAIGVDRIMTENDFSNLPYLQCVVKEAMRLHPPTPLMLPHRSNANVKIGGYDIPKGSNVHVNVWAVARDPAVWKNAEEFRPERFLEEDVGMKGHDMRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFEWTPPPGMKAEEIDMSESPGLASYMKTPVHAVATPRLPSGLYKRVPVDM 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27392516 27401824 - Lsi03G016270.1 Lsi03g01627 659377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01627 471 PRINTS E-class P450 group I signature 391 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 PRINTS E-class P450 group I signature 79 100 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 PRINTS E-class P450 group I signature 251 268 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 PRINTS E-class P450 group I signature 271 297 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 PRINTS E-class P450 group I signature 55 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 PRINTS E-class P450 group I signature 314 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 PRINTS E-class P450 group I signature 401 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 PRINTS E-class P450 group I signature 355 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 5 122 - -
Lsi03g01627 471 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 125 464 - -
Lsi03g01627 471 Gene3D Cytochrome P450 21 461 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 PRINTS P450 superfamily signature 262 279 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 PRINTS P450 superfamily signature 392 401 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 PRINTS P450 superfamily signature 315 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 PANTHER CYTOCHROME P450 98A3 5 122 - -
Lsi03g01627 471 PANTHER CYTOCHROME P450 98A3 125 464 - -
Lsi03g01627 471 Pfam Cytochrome P450 28 118 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 Pfam Cytochrome P450 120 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01627 471 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 394 403 IPR017972 GO:0005506|GO:0016705
Lsi03g01627 471 SUPERFAMILY Cytochrome P450 28 458 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01627 Lsi-Chr3:27392516 Lsi07g00668 Lsi-Chr7:7169224 4.05E-104 dispersed
Lsi03g01627 Lsi-Chr3:27392516 Lsi03g01628 Lsi-Chr3:27403667 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01627 K09754 - csv:101217257 810.831