Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01628 ATGGTTCTCTCTCTCATCCTTCTCTCTCTCCTCCTCCTTCTCCTTGCCTACAACCTCTACAACCGCCTCCGGTTCAAGCTCCCACCAGGGCCACGGCCGCTTCCGGTGGTCGGAAACCTGTACGACGTCAAACCTGTCCGGTTCAGATGCTATGCGGAATGGGCCAAGCAGTACGGTCCGATCATATCGGTGTGGTTCGGGTCGACGCTGAACGTGGTGGTGTCGAACACGGAACTGGCGAGGGAGGTTCTGAAGGAGCACGACCAGAGCCTAGCGGACCGGCACCGGAGTCGATCGGCGGCGAAATTTAGCCGGGACGGGAAGGACCTGATTTGGGCGGATTATGGACCTCATTATGTGAAGGTGAGGAAAGTTTGTACAATCGAACTGTTCTCTCCGAAACGACTTGAATCTCTGAGGCCGATTAGAGAAGATGAAGTTTCCGCCATGGTTGAAGACGTTTTCAATCACTGCACTAATTCTGAGAACCATGGAAAGAGCTTGAAGCTGAGGGAGTTTCTGGGAGCAGTTTCATTCAACAACATCACAAGGCTCGCATTTGGGAAGAGATTTGTGAATTCCGATGGCGTTTTGGATGAACAGGGCTTGGAATTCAAGGCCATTGTCGCCAATGGCCTCAAGCTTGGCGCCTCCTTGGCCATGGCCGAGCACATCCCTTGGCTCCGCTGGATGTTCCCTCTCGAAGAAGAAGCCTTCGCCAAGCACGGCGCCCGTCGCGACCGCCTCACTCGAGCCATCATGGAAGAGCACACCAAAGCTCGCAACCTGAGCGGCAATGTCAAGAACCACTTCGTCGATGCTCTCCTCACTCTCAAAGACAAGTACGATCTCAGTGAAGACACCATCATTGGCCTCCTTTGGGATATGATCACAGCCGGCATGGACACGACAGCGATTTCAGTGGAATGGGCGATGGCGGAGATCGTAAGAAACCCTAGAGTGCAAAAGAAAGTTCAGGAGGAATTAGACAATGCGATTGGAGTAGATCGGATCATGACAGAGAGCGACTTCTCAAATCTTCCATATCTCCAATGCGTCGTAAAAGAGGCGATGAGATTACATCCACCGACGCCATTGATGCTGCCGCACCGATCCAACGCCAACGTGAAGATCAGCGGCTACGACATCCCCAAGGGCTCGAACGTGCACGTGAACGTATGGGCGGTGGCACGTGACCCGGCAGTGTGGAAGAACGCGGAGGAATTCCGGCCTGAGCGGTTCTTAGAAGAGGATGTGGACATGAAAGGGCACGATCTGCGATTGCTGCCGTTCGGAGCAGGGCGGAGGGTGTGCCCAGGGGCTCAATTGGGAATTAATTTGGTGACGTCAATGTTGGGGCACCTTCTGCACCACTTCGAATGGACGCCGCCGCCGGGGATGAAGGCGGAGGAGATCGACATGTCGGAGAGCCCTGGATTGGTGTCGTATATGAAGACGCCGGTGCAGGCTGTGGCCACTCCCAGGCTGCCTTCAGGACTGTACAAACGTGTGCCTGTGGACATGTAA 1527 54.68 MVLSLILLSLLLLLLAYNLYNRLRFKLPPGPRPLPVVGNLYDVKPVRFRCYAEWAKQYGPIISVWFGSTLNVVVSNTELAREVLKEHDQSLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTIELFSPKRLESLRPIREDEVSAMVEDVFNHCTNSENHGKSLKLREFLGAVSFNNITRLAFGKRFVNSDGVLDEQGLEFKAIVANGLKLGASLAMAEHIPWLRWMFPLEEEAFAKHGARRDRLTRAIMEEHTKARNLSGNVKNHFVDALLTLKDKYDLSEDTIIGLLWDMITAGMDTTAISVEWAMAEIVRNPRVQKKVQEELDNAIGVDRIMTESDFSNLPYLQCVVKEAMRLHPPTPLMLPHRSNANVKISGYDIPKGSNVHVNVWAVARDPAVWKNAEEFRPERFLEEDVDMKGHDLRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFEWTPPPGMKAEEIDMSESPGLVSYMKTPVQAVATPRLPSGLYKRVPVDM 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27403667 27408264 - Lsi03G016280.1 Lsi03g01628 659378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01628 508 Pfam Cytochrome P450 28 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Lsi03g01628 508 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 5 501 - -
Lsi03g01628 508 Gene3D Cytochrome P450 21 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 PANTHER CYTOCHROME P450 98A3 5 501 - -
Lsi03g01628 508 PRINTS E-class P450 group I signature 177 195 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 PRINTS E-class P450 group I signature 55 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 PRINTS E-class P450 group I signature 79 100 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 PRINTS E-class P450 group I signature 351 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01628 508 SUPERFAMILY Cytochrome P450 28 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01628 Lsi-Chr3:27403667 Lsi07g00668 Lsi-Chr7:7169224 5.82E-122 dispersed
Lsi04g01601 Lsi-Chr4:23538165 Lsi03g01628 Lsi-Chr3:27403667 4.81E-45 dispersed
Lsi10g00681 Lsi-Chr10:9538744 Lsi03g01628 Lsi-Chr3:27403667 7.59E-90 dispersed
Lsi11g00816 Lsi-Chr11:10072961 Lsi03g01628 Lsi-Chr3:27403667 1.59E-77 dispersed
Lsi11g00817 Lsi-Chr11:10082791 Lsi03g01628 Lsi-Chr3:27403667 4.52E-77 dispersed
Lsi03g01627 Lsi-Chr3:27392516 Lsi03g01628 Lsi-Chr3:27403667 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01628 K09754 - csv:101217257 917.531