Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g01629 | ATGGGATTCTTAGAATGCCTTGGCCATTTCTTTCAAAATGCAATGCCTTACATTGCAGTCATCTCCCTCCAATTCGGCTACGCCGGAATGAACATCATCTCTGCCATCTCCCTCAACCGTGGTATGAGCCACTACGTCCTCGTCGTCTACCGTCACGCCTTTGCCACTGCCGTCATGGCACCCTTTGCTCTTGTTCTTGAGAGGAAAGTAAGACCCAAAATTACAATTAAGATTTTCATTCATATGTTTGTTCTAGCTCTTCTTGGGCCAGTGATTGATCAAAACTTCTACTACATGGGACTCAAAATGACATCCCCAACCATCTCCTGCGCCATAAGCAACATGCTTCCTTCAATGACATTCGCCATGGCGGTCCTTTGCAAGATGGAGAAATTGGAGTTGAAAAGAGTAAGATGTCGAGCAAAGTTGTTTGGAACAGTAGTGACGTTGGGGGGAGCCATGTTGATGACGTTTTACAAAGGAAGTGTCATCAACTTCTTCGAAACAAAGCACGGCCACCAACCGAACATACCGTCCACGGCGGTGCTCAACCACCACAACGACGGAGAGTTCATCAAAGGCTCCATTTTGCTCATCATCGCCACGTTGGCTTGGGCGGCTTTCTTCATTCTCCAAGTCATAACCTTGAGAAAATACACCGCTCATCTTTCTCTCACCACTATGATTTGCTTTTTGGGAACCATTCAGGCCATTATTGTCACCCTCGCCATGGAGCACCACTGCTCGGCCTGGGCCATCGGCTGGGACTTTAACCTTCTCGCTGTCGCTTATGCAGGGATTGTGACATCAGGGGTGGCATATTATGTTCAAGGTTTGGTTATGAAAACAAAAGGGCCAGTTTTTGTTACAGCTTTTGGGCCTATGGTCATAGTCATTGTTGCCTTCATGGGCCATTTCATCTTGGCTGAAAAGATTTATGTTGGAGGGATAATTGGATCAGTGGTGACTGTAATAGGGTTGTACTCTGTTTTGTGGGGAAAGTACAAGGAAAGCAAAGAGAAGGAAGTTGAAGAGATTGTTGAATTACCAATGAATGGTGAAGATCAATTGCCTGTAATAAATGAAAGCATTGAAGCAATTCAAAACAAAGAGGGTTTGGCCATTACTATGGAAAAGAGGCTTCAAGACATTAATCAGCCAAATCAAGAATAA | 1173 | 44.84 | MGFLECLGHFFQNAMPYIAVISLQFGYAGMNIISAISLNRGMSHYVLVVYRHAFATAVMAPFALVLERKVRPKITIKIFIHMFVLALLGPVIDQNFYYMGLKMTSPTISCAISNMLPSMTFAMAVLCKMEKLELKRVRCRAKLFGTVVTLGGAMLMTFYKGSVINFFETKHGHQPNIPSTAVLNHHNDGEFIKGSILLIIATLAWAAFFILQVITLRKYTAHLSLTTMICFLGTIQAIIVTLAMEHHCSAWAIGWDFNLLAVAYAGIVTSGVAYYVQGLVMKTKGPVFVTAFGPMVIVIVAFMGHFILAEKIYVGGIIGSVVTVIGLYSVLWGKYKESKEKEVEEIVELPMNGEDQLPVINESIEAIQNKEGLAITMEKRLQDINQPNQE | 390 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 27416313 | 27419450 | - | Lsi03G016290.1 | Lsi03g01629 | 659379 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g01629 | 390 | Pfam | EamA-like transporter family | 16 | 157 | IPR000620 | GO:0016020|GO:0016021 | |
| Lsi03g01629 | 390 | Pfam | EamA-like transporter family | 193 | 331 | IPR000620 | GO:0016020|GO:0016021 | |
| Lsi03g01629 | 390 | PANTHER | WAT1-RELATED PROTEIN | 11 | 360 | - | - | |
| Lsi03g01629 | 390 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 50 | 159 | - | - | |
| Lsi03g01629 | 390 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 232 | 335 | - | - | |
| Lsi03g01629 | 390 | PANTHER | WAT1-RELATED PROTEIN | 11 | 360 | IPR030184 | GO:0016021|GO:0022857 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g01629 | Lsi-Chr3:27416313 | Lsi04g00873 | Lsi-Chr4:8539635 | 1.57E-106 | dispersed | |
| Lsi11g00654 | Lsi-Chr11:6877896 | Lsi03g01629 | Lsi-Chr3:27416313 | 4.48E-66 | dispersed | |
| Lsi03g01629 | Lsi-Chr3:27416313 | Lsi03g01630 | Lsi-Chr3:27421729 | 0 | tandem | |
| Lsi02g01139 | Lsi-Chr2:13440788 | Lsi03g01629 | Lsi-Chr3:27416313 | 3.55E-13 | transposed | |
| Lsi04g00742 | Lsi-Chr4:6891686 | Lsi03g01629 | Lsi-Chr3:27416313 | 6.53E-92 | transposed | |
| Lsi09g01243 | Lsi-Chr9:20081817 | Lsi03g01629 | Lsi-Chr3:27416313 | 1.57E-58 | transposed | |
| Lsi01g01762 | Lsi-Chr1:16447996 | Lsi03g01629 | Lsi-Chr3:27416313 | 5.88E-53 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g01629 | - | - | bhj:120090189 | 622.468 |