Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01629 ATGGGATTCTTAGAATGCCTTGGCCATTTCTTTCAAAATGCAATGCCTTACATTGCAGTCATCTCCCTCCAATTCGGCTACGCCGGAATGAACATCATCTCTGCCATCTCCCTCAACCGTGGTATGAGCCACTACGTCCTCGTCGTCTACCGTCACGCCTTTGCCACTGCCGTCATGGCACCCTTTGCTCTTGTTCTTGAGAGGAAAGTAAGACCCAAAATTACAATTAAGATTTTCATTCATATGTTTGTTCTAGCTCTTCTTGGGCCAGTGATTGATCAAAACTTCTACTACATGGGACTCAAAATGACATCCCCAACCATCTCCTGCGCCATAAGCAACATGCTTCCTTCAATGACATTCGCCATGGCGGTCCTTTGCAAGATGGAGAAATTGGAGTTGAAAAGAGTAAGATGTCGAGCAAAGTTGTTTGGAACAGTAGTGACGTTGGGGGGAGCCATGTTGATGACGTTTTACAAAGGAAGTGTCATCAACTTCTTCGAAACAAAGCACGGCCACCAACCGAACATACCGTCCACGGCGGTGCTCAACCACCACAACGACGGAGAGTTCATCAAAGGCTCCATTTTGCTCATCATCGCCACGTTGGCTTGGGCGGCTTTCTTCATTCTCCAAGTCATAACCTTGAGAAAATACACCGCTCATCTTTCTCTCACCACTATGATTTGCTTTTTGGGAACCATTCAGGCCATTATTGTCACCCTCGCCATGGAGCACCACTGCTCGGCCTGGGCCATCGGCTGGGACTTTAACCTTCTCGCTGTCGCTTATGCAGGGATTGTGACATCAGGGGTGGCATATTATGTTCAAGGTTTGGTTATGAAAACAAAAGGGCCAGTTTTTGTTACAGCTTTTGGGCCTATGGTCATAGTCATTGTTGCCTTCATGGGCCATTTCATCTTGGCTGAAAAGATTTATGTTGGAGGGATAATTGGATCAGTGGTGACTGTAATAGGGTTGTACTCTGTTTTGTGGGGAAAGTACAAGGAAAGCAAAGAGAAGGAAGTTGAAGAGATTGTTGAATTACCAATGAATGGTGAAGATCAATTGCCTGTAATAAATGAAAGCATTGAAGCAATTCAAAACAAAGAGGGTTTGGCCATTACTATGGAAAAGAGGCTTCAAGACATTAATCAGCCAAATCAAGAATAA 1173 44.84 MGFLECLGHFFQNAMPYIAVISLQFGYAGMNIISAISLNRGMSHYVLVVYRHAFATAVMAPFALVLERKVRPKITIKIFIHMFVLALLGPVIDQNFYYMGLKMTSPTISCAISNMLPSMTFAMAVLCKMEKLELKRVRCRAKLFGTVVTLGGAMLMTFYKGSVINFFETKHGHQPNIPSTAVLNHHNDGEFIKGSILLIIATLAWAAFFILQVITLRKYTAHLSLTTMICFLGTIQAIIVTLAMEHHCSAWAIGWDFNLLAVAYAGIVTSGVAYYVQGLVMKTKGPVFVTAFGPMVIVIVAFMGHFILAEKIYVGGIIGSVVTVIGLYSVLWGKYKESKEKEVEEIVELPMNGEDQLPVINESIEAIQNKEGLAITMEKRLQDINQPNQE 390
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 27416313 27419450 - Lsi03G016290.1 Lsi03g01629 659379
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01629 390 Pfam EamA-like transporter family 16 157 IPR000620 GO:0016020|GO:0016021
Lsi03g01629 390 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020|GO:0016021
Lsi03g01629 390 PANTHER WAT1-RELATED PROTEIN 11 360 - -
Lsi03g01629 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
Lsi03g01629 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 335 - -
Lsi03g01629 390 PANTHER WAT1-RELATED PROTEIN 11 360 IPR030184 GO:0016021|GO:0022857
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01629 Lsi-Chr3:27416313 Lsi04g00873 Lsi-Chr4:8539635 1.57E-106 dispersed
Lsi11g00654 Lsi-Chr11:6877896 Lsi03g01629 Lsi-Chr3:27416313 4.48E-66 dispersed
Lsi03g01629 Lsi-Chr3:27416313 Lsi03g01630 Lsi-Chr3:27421729 0 tandem
Lsi02g01139 Lsi-Chr2:13440788 Lsi03g01629 Lsi-Chr3:27416313 3.55E-13 transposed
Lsi04g00742 Lsi-Chr4:6891686 Lsi03g01629 Lsi-Chr3:27416313 6.53E-92 transposed
Lsi09g01243 Lsi-Chr9:20081817 Lsi03g01629 Lsi-Chr3:27416313 1.57E-58 transposed
Lsi01g01762 Lsi-Chr1:16447996 Lsi03g01629 Lsi-Chr3:27416313 5.88E-53 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01629 - - bhj:120090189 622.468