Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01630 ATGGGATTCTTAGAATGCCTTGGCCATTTCTTTCAAAATGCAAATCCTTACATTGCTGTCATCTCCCTCCAATTCGGCTACGCCGGAATGAACATCATCTCCACCGTCTCCCTCCACCGTGGTATGAGCCACTATGTTCTCGTCGTCTACCGCCACGCCTTTGCCACCGCTGTCATGGCACCCTTTGCTCTTGTTCTCGAGAGGAAAGTGAGACCCAAGATTACATTTAAGATTTTCATTCAGATGTTTGTTCTTGCTCTTCTTGGACCACTGATTGATCAAAACTTCTACTATGTGGGGCTGAAAATGACATCCCCAACTTTCTCTTGTGCCATAAGCAACATGCTTCCTTCGATGACATTCGTCATGGCAGTCATTTGCAGATGTCAAGCGAAGTTATTTGGAACAATAGTGACGGTGGTGGGAGCCATGTTGATGACATTTTACAAAGGAAGTGTCATCAACATCTTCCGGACCGGGCACGGCCACCAACCGCACACACCACCTACGGGAGATGTGGCAGCGCTCGACCATCACAACGACGGAGAGTTCATCAAAGGATCCATCTTGCTCATCATAGCCACTCTGGCTTGGGCAGCCTTCTTCATTCTCCAAGTCATAACCTTGAGAAAATACACAGCTCATCTTTCTCTCACCACTTTGGTTTGCTTTTTGGGAACCCTTCAAGCCATTGTTGTCACCCTCGCCATGGAGCACCGCCCCTCGGCTTGGGTCATCGGTTGGGACTTGAACCTTCTTGCCGCCGCATATGCGGGGATTGTGACTTCAGGGGTGGCATATTATGTTCAAGGTTTGGTTATGAAGACAAAAGGGCCAGTTTTTGTTACAGCCTTTAGCCCTTTGATGATGGTGATTGTTGCTTTCATGGGATCTCTCATCTTGGCTGAAAAGATTTATGTTGGAGGGATAATTGGAGCGGTGTTGATAGTAATAGGGTTGTACTCTGTTTTGTGGGGAAAGTACAAAGAAAGCAAAGAGAAGGAAGTTGAAGAGATTGTTGAATTACCAATGAAAGGTGAAGATCAATTGCCCGTAATAAATGAAGGCATTGAAACAATTCAAAACAAAGAAGGTTTGGCCATTAGTATTCCACCCATGGATGCACTTAACATGGAAAAGAGGCTTCAAGACACTCACTAA 1161 45.82 MGFLECLGHFFQNANPYIAVISLQFGYAGMNIISTVSLHRGMSHYVLVVYRHAFATAVMAPFALVLERKVRPKITFKIFIQMFVLALLGPLIDQNFYYVGLKMTSPTFSCAISNMLPSMTFVMAVICRCQAKLFGTIVTVVGAMLMTFYKGSVINIFRTGHGHQPHTPPTGDVAALDHHNDGEFIKGSILLIIATLAWAAFFILQVITLRKYTAHLSLTTLVCFLGTLQAIVVTLAMEHRPSAWVIGWDLNLLAAAYAGIVTSGVAYYVQGLVMKTKGPVFVTAFSPLMMVIVAFMGSLILAEKIYVGGIIGAVLIVIGLYSVLWGKYKESKEKEVEEIVELPMKGEDQLPVINEGIETIQNKEGLAISIPPMDALNMEKRLQDTH 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27421729 27424331 - Lsi03G016300.1 Lsi03g01630 659380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01630 386 PANTHER WAT1-RELATED PROTEIN 11 358 IPR030184 GO:0016021|GO:0022857
Lsi03g01630 386 Pfam EamA-like transporter family 18 147 IPR000620 GO:0016020|GO:0016021
Lsi03g01630 386 Pfam EamA-like transporter family 186 324 IPR000620 GO:0016020|GO:0016021
Lsi03g01630 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 328 - -
Lsi03g01630 386 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 149 - -
Lsi03g01630 386 PANTHER WAT1-RELATED PROTEIN 11 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01630 Lsi-Chr3:27421729 Lsi04g02384 Lsi-Chr4:30985937 3.35E-105 dispersed
Lsi03g01629 Lsi-Chr3:27416313 Lsi03g01630 Lsi-Chr3:27421729 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01630 - - bhj:120090189 679.478