Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01632 ATGACAAACAAAGATAATTCCCCGAAATTCCTCCGAGACATAATCATAAGTTTCATCCTCGCCGGCCGAGACACCACTTCTTCAGCTCTTACATGGTTCTTCTGGATCATATCCTCCCGACCCGATATCGAACAAAAAATCCTTGCAGAACTCAAAACAATTCGATCAAGAACACACAAGGAAATAGAAGAAATGTATAGCTTTGACGAACTCCAAGACATGCACTATCTTCAAGCAGCATTGACCGAGACTCTTCGATTATACCCCCCGGTGCCAATCGACTCAAAAGCTTGTCAACGTGATGATATCTTACCGGACGGGACGTTTATCAAGAAGAGTTGGTTTATGATGTACCATGCATATGCAATGGGAAGAATGGAGAGCATATGGGGGAAGAATTGGCCAAGGATGTGTCCTGGAAAAGATATGGCTTTTATTCAAATGAAGTTCATAGTTGCAACTGTGATCGAGAAAAAATCCAAACCCCACGAAGGTTTCAAACACTTCCCCCTCGTCGGAACCTTGCCGATCTTCTTATTAAACCGCCACCGTTTTCTTGACTGGTCGACAGAGGTTCTGAAAAACTGCCGGACGAACACGGCGGTGTTCAAGCGGCCAGGGAAAGTCCACGGCGTAATCACAGCGAACCCACTTGTGGTTGAGCATATATTGAAGACCCAATTTGAGAATTACCCAAAAGGGGAAAGATTCATTTCGCTTTTGGAAGATTTCTTGGGGCGAGGAATTTTCAATTCCGACGGCGAAATTTGGAAAGTACAGAGGAAAACGGCGAGTTATGAATTCAATACGAAATCGTTAAGGAATTTTGTTATGGAGAATGTTAGAGTTGAGATTCAGAGTAGGTTGTTGCCTATTTTTGGAAAAGCTTCTGAAACGGAGAGGATTTTGGATCTACAGGACGTTTTGGAACAGTTTGCGTTTGATAATGTTTGTAAATTGGCTTTTAATTATGACCCTGCTTGTCTCGGCGGCGATGGTACGGCCGCCGCTGAGTTCATGCGCGCTTTTGAGGACGCCGCCACTCTCAGCTCCGGCAGATTCATGTATGCTTTCCCAAATTTGTACAAAGTGAAGAAATTTTTTAACATAGGATCAGAAAGAACCCTGAAGGAATCAATAGCCATAGTTCACAAATTTGCAGATGATATCATTTCCTCAAGAATGGAAGAGAAGAAGACAACTCAAATAGAAAAAGATCAAGATTTATTATCTCGATTCATGGGAGACGAAAACAATTCTCCAGAATTCCTTCGAGACATAATCATAAGCTTCATCCTCGCCGGGCGAGACACCACTTCTTCAGCTCTGACATGGTTCTTTTGGATCTTATCATCTCGACCTGATATTGAACAAAAAATCCTTACAGAACTCGAAACAATTCGATCAAAAACACGTAAGGAAATTGGAGAAATGTATAGCTTCGACGAACTCCGTGATATGCACTATCTACAAGCAGCATTATCTGAGACTCTCCGCCTATACCCACCAGTGCCAGTCGATACAAAAGCATGTCGAAACGATGACGTCTTACCTGACGGGACATTTATTGGGAAGAGTTGGTTTGTGACGTACCATACATATGCAATGGGGAGAATGGAGAGCATATGGGGGAAGAATTATGGAGAATTTTCGCCAGAGAGGTGGCTAGAGAATGGGGTTTGTAAGATGGAGAGTCCATTTCGATTCCCGATATTTCACGCGGGGCCGAGAATGTGTCTAGGGAAGGATATGTCTTATATTCAAATGAAGTCCATAGCTGCGGCTGTGATTGAGAAGTTTGAAGTGGAAATGGTGGAGAAGAAGAAGAGTCCAAAGCATTTGTTGTCTTTGACATTGAGAATGGAGAATGGGTTACAAGTGATGGTCAAAAAGAGAGATAAGAGTGTGCCCTTTTGA 1917 42.88 MTNKDNSPKFLRDIIISFILAGRDTTSSALTWFFWIISSRPDIEQKILAELKTIRSRTHKEIEEMYSFDELQDMHYLQAALTETLRLYPPVPIDSKACQRDDILPDGTFIKKSWFMMYHAYAMGRMESIWGKNWPRMCPGKDMAFIQMKFIVATVIEKKSKPHEGFKHFPLVGTLPIFLLNRHRFLDWSTEVLKNCRTNTAVFKRPGKVHGVITANPLVVEHILKTQFENYPKGERFISLLEDFLGRGIFNSDGEIWKVQRKTASYEFNTKSLRNFVMENVRVEIQSRLLPIFGKASETERILDLQDVLEQFAFDNVCKLAFNYDPACLGGDGTAAAEFMRAFEDAATLSSGRFMYAFPNLYKVKKFFNIGSERTLKESIAIVHKFADDIISSRMEEKKTTQIEKDQDLLSRFMGDENNSPEFLRDIIISFILAGRDTTSSALTWFFWILSSRPDIEQKILTELETIRSKTRKEIGEMYSFDELRDMHYLQAALSETLRLYPPVPVDTKACRNDDVLPDGTFIGKSWFVTYHTYAMGRMESIWGKNYGEFSPERWLENGVCKMESPFRFPIFHAGPRMCLGKDMSYIQMKSIAAAVIEKFEVEMVEKKKSPKHLLSLTLRMENGLQVMVKKRDKSVPF 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27454110 27461214 + Lsi03G016320.1 Lsi03g01632 659382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01632 638 Gene3D Cytochrome P450 165 637 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PANTHER CYTOCHROME P450 160 630 - -
Lsi03g01632 638 SUPERFAMILY Cytochrome P450 6 156 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PANTHER CYTOCHROME P450 94B3-LIKE 3 133 - -
Lsi03g01632 638 Gene3D Cytochrome P450 1 164 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 Pfam Cytochrome P450 205 616 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 Pfam Cytochrome P450 11 130 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PANTHER CYTOCHROME P450 135 158 - -
Lsi03g01632 638 PRINTS P450 superfamily signature 570 579 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PRINTS P450 superfamily signature 492 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PRINTS P450 superfamily signature 434 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PRINTS P450 superfamily signature 579 590 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PANTHER CYTOCHROME P450 3 133 - -
Lsi03g01632 638 PANTHER CYTOCHROME P450 94B3-LIKE 135 158 - -
Lsi03g01632 638 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 572 581 IPR017972 GO:0005506|GO:0016705
Lsi03g01632 638 SUPERFAMILY Cytochrome P450 162 633 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PRINTS E-class P450 group I signature 579 602 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PRINTS E-class P450 group I signature 423 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PRINTS E-class P450 group I signature 569 579 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PRINTS E-class P450 group I signature 491 509 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PRINTS E-class P450 group I signature 443 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01632 638 PANTHER CYTOCHROME P450 94B3-LIKE 160 630 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01632 Lsi-Chr3:27454110 Lsi05g00982 Lsi-Chr5:17155109 3.54E-45 dispersed
Lsi07g01474 Lsi-Chr7:21464729 Lsi03g01632 Lsi-Chr3:27454110 6.10E-39 dispersed
Lsi03g01631 Lsi-Chr3:27451203 Lsi03g01632 Lsi-Chr3:27454110 1.36E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01632 - - csv:101211731 897.886