Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01637 ATGAGGGAAGAAGATTCAAATTGGTTCTCTAAATGGGAACAGGAGCTTCCTTCACCTGATGAATTGATGCCTCTTTCCCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGATATCACTAACTCTAATCCTCCCATAAATAACAATTCTCATCCACCGCCGCCTCCGCCGCCGCTTCCGGTGCTCACTCAGCCTAGTTCTGCAGATTTTGGGGATTCAGGGGATTTAGGGTCCGGCGCCGGCGACGAACCTGCCAGAACCCTGAAACGGCCGCGGCTTGTATGGACTCCGCAGCTCCATAAGCGATTCGTGGACGCCGTTGCTCATTTGGGGATAAAAAATGCCGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACACGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGTCTCTATTTGAAGCGTATGCAGGGGATTTCCGGTGGTGGTGGTGGCGGAGCTAGTGGCGGTAGTGGATTGCCTTCAGCCGCTTCAGATCCTGCCACCGATCATTTGTTTGCTAGTTCCCCTGTTCCACCTCATTTTCTTCACTCTGCTCGGGGAAATTCCGACCATTTCTTGCCGTTTGTTCCCGTCGGAGCTCTGCAGCATCACCACCAACAGATGGCCGCCGCCGCTGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAGTTTGGGTCGCCGCCGAATGGGCAATTTGAGCATCCGTTTTTGGCTCGCCCTGTTCACCGGATTGGAGCTCCGGTGAGTACTACGGCGACGAATTACAGCGAGGATTTGGATTCGGGTAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAATGATTAA 861 52.85 MREEDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITNSNPPINNNSHPPPPPPPLPVLTQPSSADFGDSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGGGGGASGGSGLPSAASDPATDHLFASSPVPPHFLHSARGNSDHFLPFVPVGALQHHHQQMAAAAAAAQYHRQVAQFGSPPNGQFEHPFLARPVHRIGAPVSTTATNYSEDLDSGNGTGGRKVLTLFPTGND 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27490708 27491568 + Lsi03G016370.1 Lsi03g01637 659387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01637 286 MobiDBLite consensus disorder prediction 48 64 - -
Lsi03g01637 286 SUPERFAMILY Homeodomain-like 88 148 IPR009057 -
Lsi03g01637 286 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 286 IPR044841 GO:0003700|GO:0006355
Lsi03g01637 286 MobiDBLite consensus disorder prediction 1 20 - -
Lsi03g01637 286 Gene3D - 88 150 - -
Lsi03g01637 286 Pfam Myb-like DNA-binding domain 95 143 IPR001005 -
Lsi03g01637 286 MobiDBLite consensus disorder prediction 259 286 - -
Lsi03g01637 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 147 IPR017930 -
Lsi03g01637 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 92 144 IPR006447 GO:0003677
Lsi03g01637 286 MobiDBLite consensus disorder prediction 155 176 - -
Lsi03g01637 286 MobiDBLite consensus disorder prediction 40 86 - -
Lsi03g01637 286 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01637 Lsi-Chr3:27490708 Lsi10g01395 Lsi-Chr10:18089773 1.56E-32 dispersed
Lsi03g01637 Lsi-Chr3:27490708 Lsi02g01341 Lsi-Chr2:17893153 8.81E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25030 PF00249 Myb_DNA-binding 2.00E-08 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01637 - - csv:101216059 434.876