Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01637 ATGAGGGAAGAAGATTCAAATTGGTTCTCTAAATGGGAACAGGAGCTTCCTTCACCTGATGAATTGATGCCTCTTTCCCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGATATCACTAACTCTAATCCTCCCATAAATAACAATTCTCATCCACCGCCGCCTCCGCCGCCGCTTCCGGTGCTCACTCAGCCTAGTTCTGCAGATTTTGGGGATTCAGGGGATTTAGGGTCCGGCGCCGGCGACGAACCTGCCAGAACCCTGAAACGGCCGCGGCTTGTATGGACTCCGCAGCTCCATAAGCGATTCGTGGACGCCGTTGCTCATTTGGGGATAAAAAATGCCGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACACGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGTCTCTATTTGAAGCGTATGCAGGGGATTTCCGGTGGTGGTGGTGGCGGAGCTAGTGGCGGTAGTGGATTGCCTTCAGCCGCTTCAGATCCTGCCACCGATCATTTGTTTGCTAGTTCCCCTGTTCCACCTCATTTTCTTCACTCTGCTCGGGGAAATTCCGACCATTTCTTGCCGTTTGTTCCCGTCGGAGCTCTGCAGCATCACCACCAACAGATGGCCGCCGCCGCTGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAGTTTGGGTCGCCGCCGAATGGGCAATTTGAGCATCCGTTTTTGGCTCGCCCTGTTCACCGGATTGGAGCTCCGGTGAGTACTACGGCGACGAATTACAGCGAGGATTTGGATTCGGGTAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAATGATTAA 861 52.85 MREEDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITNSNPPINNNSHPPPPPPPLPVLTQPSSADFGDSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGGGGGASGGSGLPSAASDPATDHLFASSPVPPHFLHSARGNSDHFLPFVPVGALQHHHQQMAAAAAAAQYHRQVAQFGSPPNGQFEHPFLARPVHRIGAPVSTTATNYSEDLDSGNGTGGRKVLTLFPTGND 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27490708 27491568 + Lsi03G016370.1 Lsi03g01637 659387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01637 286 MobiDBLite consensus disorder prediction 48 64 - -
Lsi03g01637 286 SUPERFAMILY Homeodomain-like 88 148 IPR009057 -
Lsi03g01637 286 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 286 IPR044841 GO:0003700|GO:0006355
Lsi03g01637 286 MobiDBLite consensus disorder prediction 1 20 - -
Lsi03g01637 286 Gene3D - 88 150 - -
Lsi03g01637 286 Pfam Myb-like DNA-binding domain 95 143 IPR001005 -
Lsi03g01637 286 MobiDBLite consensus disorder prediction 259 286 - -
Lsi03g01637 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 147 IPR017930 -
Lsi03g01637 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 92 144 IPR006447 GO:0003677
Lsi03g01637 286 MobiDBLite consensus disorder prediction 155 176 - -
Lsi03g01637 286 MobiDBLite consensus disorder prediction 40 86 - -
Lsi03g01637 286 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01637 - - - csv:101216059 434.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01637 Lsi-Chr3:27490708 Lsi10g01395 Lsi-Chr10:18089773 1.56E-32 dispersed
Lsi03g01637 Lsi-Chr3:27490708 Lsi02g01341 Lsi-Chr2:17893153 8.81E-47 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi04g00286 . 19 257 G2-like Transcription Factor Family AT1G25550 54.9 6.3e-54 208.0
Lsi08g00393 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 3.8e-51 198.7
Lsi02g01341 . 1 269 G2-like Transcription Factor Family AT3G46640 52.2 1.5e-62 236.9
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT5G05090 55.6 7.9e-70 260.8
Lsi05g01838 . 7 314 G2-like Transcription Factor Family AT4G13640 53.6 6.1e-55 211.5
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi11g01586 . 1 387 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-81 299.7
Lsi10g01509 . 1 166 G2-like Transcription Factor Family AT1G79430 71.0 3.1e-61 232.6
Lsi03g01290 . 70 292 G2-like Transcription Factor Family AT5G18240 53.3 6.4e-50 194.9
Lsi01g00520 . 84 343 G2-like Transcription Factor Family AT2G01060 56.8 2.5e-51 199.1
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT3G10760 56.9 5.6e-81 298.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25030 PF00249 Myb_DNA-binding 2.00E-08 CL0123 Lsi TF