Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01649 ATGTCTTCTGGGGCTCGATTGCTTGTCTTGGATTTTGCCCTCTCTTTTATGTGGTTATGGTCGGGGGTTTTGGTTAAGATCTTTGTTTTTGGGATATTGGGGTTCGGAAATGATCTGATTAGTGAGGTTGTCAAGGCTGCCGTTTCGATCCTCAACATGTTTTTCTTTGCGTTCTTGGTGAAAATTTCAAAAGGGGCTGCTTATAATCCTCTTAGCATCTTGTCTGCTGCTTTTTCTGGGGATTTCAGTAGCTTTCTCTTCATTGTTGGTGCCAGAATCCCTGCTCAGGTAATGGGAGCTATTACTGCTGTTAGGCTGATTATCCATACGTTTCCTGAAGCAGGACGAGGGCCTCGTTTAAACGTTGGCATCCATCACGGTGCCTTGACAGAAGGATTGTTAACGTTTGCCATTGTCTTTATCTCGCTCGGACTTTCAAGGAAAGTCGTCGGAAATTTCTTCATGAAGACTTGGATCTCAAGTTTATCCAAGTTAACTCTTCATATTCTCGGTTCCGACTTAACTGGTGGCTGTATGAACCCTGCATCTGTAATGGGATGGGCGTATGCTCGTGGGGAACATATAACGATCGAACATATTCTTGTATACTGGATTGCTCCAATTCAAGGAACTATAGTAGCGGTATTGACGTTTAAGTTACTATTTCGACAACCGAAAGAGGAGAAAGTAAATGTGAAGAAGAAATCAGAATGA 714 42.72 MSSGARLLVLDFALSFMWLWSGVLVKIFVFGILGFGNDLISEVVKAAVSILNMFFFAFLVKISKGAAYNPLSILSAAFSGDFSSFLFIVGARIPAQVMGAITAVRLIIHTFPEAGRGPRLNVGIHHGALTEGLLTFAIVFISLGLSRKVVGNFFMKTWISSLSKLTLHILGSDLTGGCMNPASVMGWAYARGEHITIEHILVYWIAPIQGTIVAVLTFKLLFRQPKEEKVNVKKKSE 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27664865 27670501 - Lsi03G016490.1 Lsi03g01649 659399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01649 237 Pfam Major intrinsic protein 46 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01649 237 PANTHER AQUAPORIN SIP2-1-RELATED 4 237 - -
Lsi03g01649 237 PRINTS Major intrinsic protein family signature 201 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01649 237 PRINTS Major intrinsic protein family signature 161 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01649 237 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01649 237 PRINTS Major intrinsic protein family signature 130 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01649 237 PRINTS Major intrinsic protein family signature 88 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi03g01649 237 Gene3D Glycerol uptake facilitator protein. 3 236 IPR023271 -
Lsi03g01649 237 PANTHER AQUAPORIN SIP2-1-RELATED 4 237 IPR044226 GO:0015267
Lsi03g01649 237 SUPERFAMILY Aquaporin-like 6 234 IPR023271 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01649 K09875 - csv:101214379 415.231