Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01657 ATGGAGGGACGTTTCAAGTACCAACCTGGTCAAGTTAGTGCATTCGGGATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGTTGCTCGGGCTATATTAGAGAACCCGAACGACAACACAAAGGTTCACCTTATTTACGCCAATGTTACATTAGAAGATATTCTATTGAAGGAGGAATTGGATCTTCTTGCCAAAAGATACCCTGATCGCTTCAAAATCTACTATGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGTGGCGTTGGATTTGTGTCCAAAGAAATGATTAAAGCGCATTGCCCTGCACCTGCCGCTGACATTAAGAGGTTCTCTGCTGTAGCACAGAGACCAGTGCTCGCGAAAGCTGCCTCCGTCTACACGACATGGGAAGGCATCGACTCCGTCAACATTGCCGATGACGTAACTCAGTTGATCGGAAGAACGCCCATGGTATATCTCAACAAAGTAACAGAAGGTTGTGTGGCAAATGTTGCTGCAAAACTTGAATCAATGCAACCATGTCGAAGTGTCAAAGACAGGATTGGGTACAGTATGATATCCAGTGCGGAGGAGAGTGGTGCAATTTCTCCAGATAAGACCATATTAGTTGAACCAACAACTGGCAATACGGGACTTGGCATAGCTTTCGTTGCTGCAACAAAAGGGTACAAACTTGTAGTCACCGTGCCTGCATCCATAAATGTTGAAAGGAGGATCCTACTGCGTGCTTTTGGTGCAGATATTGTTTTGACAGACCCAGAGAAAGGCCTCCAAGGGGCTATTGCCAAAGCTGAAGAAATTCTAATTAGTACTCCCAATGCCTACATGCTTCAACAGTTTGATAACATTGCAAATACAAAGGTCCACTTTGAAACTACAGGACCTGAGATATGGGAGGATACCATGGGTAGTGTTGATATATTAGTTGCTGGAATTGGAACTGGTGGTACCATTACAGGCACTGGTTATGTGCCCCCTATTCTGGATGTCAAGTTGCTTGATGAGGTGATCAAGGTAACCAATGATGAAGCTATAGAATTGGCCAGGAGATTAGCATTGGAGGAAGGCCTACTGGTTGGCATTTCATCCGGAGCTGCTGCAGTAGCAGCGATAAGTTTGGCAAGGAGGCCTGAAAATGCCGGAAAACTTATTGTGGTTATATTTCCAAGCTATGGTGAGAGATACCTATCGTCGGTACTTTTTCGTTCTATTTATGAAGAAGCTCAGAGAATGTAG 1242 44.93 MEGRFKYQPGQVSAFGMLAGGSGITPMYQVARAILENPNDNTKVHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPEVWDGGVGFVSKEMIKAHCPAPAADIKRFSAVAQRPVLAKAASVYTTWEGIDSVNIADDVTQLIGRTPMVYLNKVTEGCVANVAAKLESMQPCRSVKDRIGYSMISSAEESGAISPDKTILVEPTTGNTGLGIAFVAATKGYKLVVTVPASINVERRILLRAFGADIVLTDPEKGLQGAIAKAEEILISTPNAYMLQQFDNIANTKVHFETTGPEIWEDTMGSVDILVAGIGTGGTITGTGYVPPILDVKLLDEVIKVTNDEAIELARRLALEEGLLVGISSGAAAVAAISLARRPENAGKLIVVIFPSYGERYLSSVLFRSIYEEAQRM 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27752039 27764550 + Lsi03G016570.1 Lsi03g01657 659407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01657 413 Pfam Oxidoreductase NAD-binding domain 17 103 IPR001433 GO:0016491
Lsi03g01657 413 Gene3D - 145 323 IPR036052 -
Lsi03g01657 413 PANTHER S-SULFO-L-CYSTEINE SYNTHASE (O-ACETYL-L-SERINE-DEPENDENT), CHLOROPLASTIC 323 413 - -
Lsi03g01657 413 PANTHER S-SULFO-L-CYSTEINE SYNTHASE (O-ACETYL-L-SERINE-DEPENDENT), CHLOROPLASTIC 124 324 - -
Lsi03g01657 413 CDD CBS_like 148 399 - -
Lsi03g01657 413 CDD cyt_b5_reduct_like 3 108 - -
Lsi03g01657 413 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 169 187 IPR001216 GO:0006535
Lsi03g01657 413 Gene3D - 181 283 IPR036052 -
Lsi03g01657 413 Gene3D - 1 122 IPR039261 -
Lsi03g01657 413 PANTHER CYSTATHIONINE BETA-SYNTHASE 323 413 - -
Lsi03g01657 413 PANTHER CYSTATHIONINE BETA-SYNTHASE 124 324 - -
Lsi03g01657 413 PRINTS Cytochrome B5 reductase signature 54 65 - -
Lsi03g01657 413 PRINTS Cytochrome B5 reductase signature 16 35 - -
Lsi03g01657 413 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 138 406 IPR036052 -
Lsi03g01657 413 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 3 109 IPR039261 -
Lsi03g01657 413 Pfam Pyridoxal-phosphate dependent enzyme 143 323 IPR001926 -
Lsi03g01657 413 Gene3D - 324 413 IPR036052 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01736 Lsi03g01657 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01657 Lsi-Chr3:27752039 Lsi04g00700 Lsi-Chr4:6395711 2.50E-123 dispersed
Lsi11g00303 Lsi-Chr11:3147415 Lsi03g01657 Lsi-Chr3:27752039 6.35E-32 dispersed
Lsi03g01657 Lsi-Chr3:27752039 Lsi11g00472 Lsi-Chr11:4971439 7.67E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01657 K22846 - csv:101212693 498.819