Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01657 ATGGAGGGACGTTTCAAGTACCAACCTGGTCAAGTTAGTGCATTCGGGATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGTTGCTCGGGCTATATTAGAGAACCCGAACGACAACACAAAGGTTCACCTTATTTACGCCAATGTTACATTAGAAGATATTCTATTGAAGGAGGAATTGGATCTTCTTGCCAAAAGATACCCTGATCGCTTCAAAATCTACTATGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGTGGCGTTGGATTTGTGTCCAAAGAAATGATTAAAGCGCATTGCCCTGCACCTGCCGCTGACATTAAGAGGTTCTCTGCTGTAGCACAGAGACCAGTGCTCGCGAAAGCTGCCTCCGTCTACACGACATGGGAAGGCATCGACTCCGTCAACATTGCCGATGACGTAACTCAGTTGATCGGAAGAACGCCCATGGTATATCTCAACAAAGTAACAGAAGGTTGTGTGGCAAATGTTGCTGCAAAACTTGAATCAATGCAACCATGTCGAAGTGTCAAAGACAGGATTGGGTACAGTATGATATCCAGTGCGGAGGAGAGTGGTGCAATTTCTCCAGATAAGACCATATTAGTTGAACCAACAACTGGCAATACGGGACTTGGCATAGCTTTCGTTGCTGCAACAAAAGGGTACAAACTTGTAGTCACCGTGCCTGCATCCATAAATGTTGAAAGGAGGATCCTACTGCGTGCTTTTGGTGCAGATATTGTTTTGACAGACCCAGAGAAAGGCCTCCAAGGGGCTATTGCCAAAGCTGAAGAAATTCTAATTAGTACTCCCAATGCCTACATGCTTCAACAGTTTGATAACATTGCAAATACAAAGGTCCACTTTGAAACTACAGGACCTGAGATATGGGAGGATACCATGGGTAGTGTTGATATATTAGTTGCTGGAATTGGAACTGGTGGTACCATTACAGGCACTGGTTATGTGCCCCCTATTCTGGATGTCAAGTTGCTTGATGAGGTGATCAAGGTAACCAATGATGAAGCTATAGAATTGGCCAGGAGATTAGCATTGGAGGAAGGCCTACTGGTTGGCATTTCATCCGGAGCTGCTGCAGTAGCAGCGATAAGTTTGGCAAGGAGGCCTGAAAATGCCGGAAAACTTATTGTGGTTATATTTCCAAGCTATGGTGAGAGATACCTATCGTCGGTACTTTTTCGTTCTATTTATGAAGAAGCTCAGAGAATGTAG 1242 44.93 MEGRFKYQPGQVSAFGMLAGGSGITPMYQVARAILENPNDNTKVHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPEVWDGGVGFVSKEMIKAHCPAPAADIKRFSAVAQRPVLAKAASVYTTWEGIDSVNIADDVTQLIGRTPMVYLNKVTEGCVANVAAKLESMQPCRSVKDRIGYSMISSAEESGAISPDKTILVEPTTGNTGLGIAFVAATKGYKLVVTVPASINVERRILLRAFGADIVLTDPEKGLQGAIAKAEEILISTPNAYMLQQFDNIANTKVHFETTGPEIWEDTMGSVDILVAGIGTGGTITGTGYVPPILDVKLLDEVIKVTNDEAIELARRLALEEGLLVGISSGAAAVAAISLARRPENAGKLIVVIFPSYGERYLSSVLFRSIYEEAQRM 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27752039 27764550 + Lsi03G016570.1 Lsi03g01657 659407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01657 413 Pfam Oxidoreductase NAD-binding domain 17 103 IPR001433 GO:0016491
Lsi03g01657 413 Gene3D - 145 323 IPR036052 -
Lsi03g01657 413 PANTHER S-SULFO-L-CYSTEINE SYNTHASE (O-ACETYL-L-SERINE-DEPENDENT), CHLOROPLASTIC 323 413 - -
Lsi03g01657 413 PANTHER S-SULFO-L-CYSTEINE SYNTHASE (O-ACETYL-L-SERINE-DEPENDENT), CHLOROPLASTIC 124 324 - -
Lsi03g01657 413 CDD CBS_like 148 399 - -
Lsi03g01657 413 CDD cyt_b5_reduct_like 3 108 - -
Lsi03g01657 413 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 169 187 IPR001216 GO:0006535
Lsi03g01657 413 Gene3D - 181 283 IPR036052 -
Lsi03g01657 413 Gene3D - 1 122 IPR039261 -
Lsi03g01657 413 PANTHER CYSTATHIONINE BETA-SYNTHASE 323 413 - -
Lsi03g01657 413 PANTHER CYSTATHIONINE BETA-SYNTHASE 124 324 - -
Lsi03g01657 413 PRINTS Cytochrome B5 reductase signature 54 65 - -
Lsi03g01657 413 PRINTS Cytochrome B5 reductase signature 16 35 - -
Lsi03g01657 413 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 138 406 IPR036052 -
Lsi03g01657 413 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 3 109 IPR039261 -
Lsi03g01657 413 Pfam Pyridoxal-phosphate dependent enzyme 143 323 IPR001926 -
Lsi03g01657 413 Gene3D - 324 413 IPR036052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01657 K22846 CS26; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] - csv:101212693 498.819
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g01736 Lsi03g01657 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01657 Lsi-Chr3:27752039 Lsi04g00700 Lsi-Chr4:6395711 2.50E-123 dispersed
Lsi11g00303 Lsi-Chr11:3147415 Lsi03g01657 Lsi-Chr3:27752039 6.35E-32 dispersed
Lsi03g01657 Lsi-Chr3:27752039 Lsi11g00472 Lsi-Chr11:4971439 7.67E-119 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g84 . . . . Bpe04g01356 Bpe03g01064 Bma04g01430 Bma10g00255 . . Cma03g00173 Cma07g01119 Car03g00161 . Sed03g2083 Cpe10g01086 . Bhi03g02557 Tan03g0549 Cmetu08g0889 . Hepe04g0560 . . . . . . . . . . . . . Lsi01g01736 Csa04g01830 Chy08g00202 Cme04g02153 Blo07g01200 . Bda03g01493 Bda05g00993 . . . . . Cmo03g00203 Cmo07g01169 . . Car06g00039 . . . . . . . . . . Cla10g01589 Cam10g1638 Cec10g1687 Cco10g1651 Clacu10g1653 Cmu10g2408 Cre10g1789 Lsi03g01657 Csa03g03663 Chy04g01700 Cme08g01481
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G53560 78.4 7.0e-59 223.4
Lsi05g01833 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.1e-51 197.6
Lsi05g01118 . 4 131 NADPH P450 reductases AT5G53560 63.3 4.4e-45 177.6
Lsi09g01152 . 36 139 NADPH P450 reductases AT5G53560 70.2 4.7e-39 157.5
Lsi05g01833 . 1 132 NADPH P450 reductases AT5G48810 65.7 2.6e-48 188.3
Lsi05g01118 . 2 132 NADPH P450 reductases AT5G48810 61.7 4.6e-45 177.6
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G48810 59.6 7.9e-45 176.8
Lsi05g01833 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.0e-51 196.8
Lsi09g01152 . 31 139 NADPH P450 reductases AT2G32720 83.5 1.2e-47 186.0
Lsi05g01118 . 21 132 NADPH P450 reductases AT2G32720 72.3 2.7e-42 168.3
Lsi09g00003 . 22 133 NADPH P450 reductases AT2G32720 66.1 4.3e-40 161.0
Lsi01g01736 CCT 3 257 NADPH P450 reductases AT5G17770 79.6 1.2e-116 416.4
Lsi10g00932 . 10 282 NADPH P450 reductases AT5G17770 71.8 4.5e-116 414.5
Lsi03g01657 CCT 2 110 NADPH P450 reductases AT5G17770 81.7 1.8e-48 189.9
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G53560 78.4 7.0e-59 223.4
Lsi05g01833 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.1e-51 197.6
Lsi05g01118 . 4 131 NADPH P450 reductases AT5G53560 63.3 4.4e-45 177.6
Lsi09g01152 . 36 139 NADPH P450 reductases AT5G53560 70.2 4.7e-39 157.5
Lsi05g01833 . 1 132 NADPH P450 reductases AT5G48810 65.7 2.6e-48 188.3
Lsi05g01118 . 2 132 NADPH P450 reductases AT5G48810 61.7 4.6e-45 177.6
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G48810 59.6 7.9e-45 176.8
Lsi05g01833 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.0e-51 196.8
Lsi09g01152 . 31 139 NADPH P450 reductases AT2G32720 83.5 1.2e-47 186.0
Lsi05g01118 . 21 132 NADPH P450 reductases AT2G32720 72.3 2.7e-42 168.3
Lsi09g00003 . 22 133 NADPH P450 reductases AT2G32720 66.1 4.3e-40 161.0
Lsi01g01736 CCT 3 257 NADPH P450 reductases AT5G17770 79.6 1.2e-116 416.4
Lsi10g00932 . 10 282 NADPH P450 reductases AT5G17770 71.8 4.5e-116 414.5
Lsi03g01657 CCT 2 110 NADPH P450 reductases AT5G17770 81.7 1.8e-48 189.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011506 0 5 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 30