Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01692 ATGACATATAATAGGTTTGTCATGGAAACTCATGGTGATGACCCAAATAGTCCAAATCAAAGCTGTGAGAGGGCGGAGCCGGTGAGATCACGGTGGACTCCCAAGCCGGAGCAGATTCTAATTTTGGAGTCCATTTTCAATAGTGGAATGGTTAATCCTCCTAAAGATGAGACTGTTAGAATTAGAAAGCTTCTTGAAAAATTTGGTTCTGTTGGGGATGCCAATGTTTTCTATTGGTTTCAAAACCGCCGCTCTCGCTCTCGCCGCCGCCAGCGCCAGCTACAAGCCGCCGCCACTCACCAAAGCAGCGGCGGTGCAATTCACTATGATGGTGGTAGTGTCGGCGGTGGCGGTTACAACGGCGGTGTTATGAATTTTGGTGGTGCTTCCTCTTCATACCTTGGAGGAGGAGGATCCTCGTCCTCGTCCTCCTCCGCTTCTGGGGTTGGAGGAGATTGTAGCAGCGGTGTCGGCGGCGGCGGATTTTCGATGTCTGGTCATATGGGTTTCTCTGAAGTTGATCAACAAATGGTTGTGGCAACTCCTCCCTTTTGCCCTTCGGAAACCTCAAATTTAGAGTTTCAATCAGGCTATATTATAATATTCATAAATGGAGTTCCAACAGAAGTTCCAAAAGGACCAGTGGACATGAAGGCAATGTTTGGGCAAGAGACAGTGTTAGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCTCTGCACACTTTACAGCATGGTGAAAGTTATTTTCTGGTAATTAATTATTATTCCCCCACATTTTTCTCTCTCTGTTTCTACCTAAAATCCGGTTTGATAACTATTTAA 837 45.64 MTYNRFVMETHGDDPNSPNQSCERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQSSGGAIHYDGGSVGGGGYNGGVMNFGGASSSYLGGGGSSSSSSSASGVGGDCSSGVGGGGFSMSGHMGFSEVDQQMVVATPPFCPSETSNLEFQSGYIIIFINGVPTEVPKGPVDMKAMFGQETVLVHSSGLPVLTNEFGISLHTLQHGESYFLVINYYSPTFFSLCFYLKSGLITI 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28214776 28221866 - Lsi03G016920.1 Lsi03g01692 659442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01692 278 Pfam Homeodomain 29 89 IPR001356 GO:0003677
Lsi03g01692 278 ProSiteProfiles 'Homeobox' domain profile. 25 90 IPR001356 GO:0003677
Lsi03g01692 278 MobiDBLite consensus disorder prediction 1 30 - -
Lsi03g01692 278 SMART HOX_1 27 94 IPR001356 GO:0003677
Lsi03g01692 278 PANTHER WUSCHEL-RELATED HOMEOBOX 11 11 258 IPR044558 GO:0003700|GO:0048830
Lsi03g01692 278 PANTHER WUSCHEL-RELATED HOMEOBOX 11 11 258 - -
Lsi03g01692 278 SUPERFAMILY Homeodomain-like 25 97 IPR009057 -
Lsi03g01692 278 Gene3D - 29 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01692 - - - csv:101207317 370.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00272 Lsi-Chr1:2431624 Lsi03g01692 Lsi-Chr3:28214776 5.20E-08 dispersed
Lsi03g01692 Lsi-Chr3:28214776 Lsi02g01365 Lsi-Chr2:18450158 2.12E-15 dispersed
Lsi03g01692 Lsi-Chr3:28214776 Lsi02g00230 Lsi-Chr2:1934707 4.62E-16 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00230 CCT,ECH 1 196 Wox Gene Family AT3G18010 54.9 2.5e-47 186.4
Lsi06g01287 CCT,ECH 20 187 Wox Gene Family AT3G18010 57.8 3.1e-42 169.5
Lsi03g01692 . 25 257 Wox Gene Family AT3G03660 52.1 4.7e-47 185.3
Lsi07g01059 . 1 276 Wox Gene Family AT4G35550 51.2 8.5e-72 267.3
Lsi04g01814 . 1 189 Wox Gene Family AT4G35550 62.9 4.5e-57 218.4
Lsi08g01489 . 125 278 Wox Gene Family AT1G46480 57.7 3.6e-40 161.8
Lsi02g00230 CCT,ECH 1 196 Wox Gene Family AT3G18010 54.9 2.5e-47 186.4
Lsi06g01287 CCT,ECH 20 187 Wox Gene Family AT3G18010 57.8 3.1e-42 169.5
Lsi08g01489 . 125 278 Wox Gene Family AT1G46480 57.7 3.6e-40 161.8
Lsi03g01692 . 25 257 Wox Gene Family AT3G03660 52.1 4.7e-47 185.3
Lsi07g01059 . 1 276 Wox Gene Family AT4G35550 51.2 8.5e-72 267.3
Lsi04g01814 . 1 189 Wox Gene Family AT4G35550 62.9 4.5e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005221 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25035 PF00046 Homeodomain 7.60E-13 CL0123 Lsi TF