Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01692 ATGACATATAATAGGTTTGTCATGGAAACTCATGGTGATGACCCAAATAGTCCAAATCAAAGCTGTGAGAGGGCGGAGCCGGTGAGATCACGGTGGACTCCCAAGCCGGAGCAGATTCTAATTTTGGAGTCCATTTTCAATAGTGGAATGGTTAATCCTCCTAAAGATGAGACTGTTAGAATTAGAAAGCTTCTTGAAAAATTTGGTTCTGTTGGGGATGCCAATGTTTTCTATTGGTTTCAAAACCGCCGCTCTCGCTCTCGCCGCCGCCAGCGCCAGCTACAAGCCGCCGCCACTCACCAAAGCAGCGGCGGTGCAATTCACTATGATGGTGGTAGTGTCGGCGGTGGCGGTTACAACGGCGGTGTTATGAATTTTGGTGGTGCTTCCTCTTCATACCTTGGAGGAGGAGGATCCTCGTCCTCGTCCTCCTCCGCTTCTGGGGTTGGAGGAGATTGTAGCAGCGGTGTCGGCGGCGGCGGATTTTCGATGTCTGGTCATATGGGTTTCTCTGAAGTTGATCAACAAATGGTTGTGGCAACTCCTCCCTTTTGCCCTTCGGAAACCTCAAATTTAGAGTTTCAATCAGGCTATATTATAATATTCATAAATGGAGTTCCAACAGAAGTTCCAAAAGGACCAGTGGACATGAAGGCAATGTTTGGGCAAGAGACAGTGTTAGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCTCTGCACACTTTACAGCATGGTGAAAGTTATTTTCTGGTAATTAATTATTATTCCCCCACATTTTTCTCTCTCTGTTTCTACCTAAAATCCGGTTTGATAACTATTTAA 837 45.64 MTYNRFVMETHGDDPNSPNQSCERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQSSGGAIHYDGGSVGGGGYNGGVMNFGGASSSYLGGGGSSSSSSSASGVGGDCSSGVGGGGFSMSGHMGFSEVDQQMVVATPPFCPSETSNLEFQSGYIIIFINGVPTEVPKGPVDMKAMFGQETVLVHSSGLPVLTNEFGISLHTLQHGESYFLVINYYSPTFFSLCFYLKSGLITI 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28214776 28221866 - Lsi03G016920.1 Lsi03g01692 659442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01692 278 Pfam Homeodomain 29 89 IPR001356 GO:0003677
Lsi03g01692 278 ProSiteProfiles 'Homeobox' domain profile. 25 90 IPR001356 GO:0003677
Lsi03g01692 278 MobiDBLite consensus disorder prediction 1 30 - -
Lsi03g01692 278 SMART HOX_1 27 94 IPR001356 GO:0003677
Lsi03g01692 278 PANTHER WUSCHEL-RELATED HOMEOBOX 11 11 258 IPR044558 GO:0003700|GO:0048830
Lsi03g01692 278 PANTHER WUSCHEL-RELATED HOMEOBOX 11 11 258 - -
Lsi03g01692 278 SUPERFAMILY Homeodomain-like 25 97 IPR009057 -
Lsi03g01692 278 Gene3D - 29 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00272 Lsi-Chr1:2431624 Lsi03g01692 Lsi-Chr3:28214776 5.20E-08 dispersed
Lsi03g01692 Lsi-Chr3:28214776 Lsi02g01365 Lsi-Chr2:18450158 2.12E-15 dispersed
Lsi03g01692 Lsi-Chr3:28214776 Lsi02g00230 Lsi-Chr2:1934707 4.62E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25035 PF00046 Homeodomain 7.60E-13 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01692 - - csv:101207317 370.933