Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01692 | ATGACATATAATAGGTTTGTCATGGAAACTCATGGTGATGACCCAAATAGTCCAAATCAAAGCTGTGAGAGGGCGGAGCCGGTGAGATCACGGTGGACTCCCAAGCCGGAGCAGATTCTAATTTTGGAGTCCATTTTCAATAGTGGAATGGTTAATCCTCCTAAAGATGAGACTGTTAGAATTAGAAAGCTTCTTGAAAAATTTGGTTCTGTTGGGGATGCCAATGTTTTCTATTGGTTTCAAAACCGCCGCTCTCGCTCTCGCCGCCGCCAGCGCCAGCTACAAGCCGCCGCCACTCACCAAAGCAGCGGCGGTGCAATTCACTATGATGGTGGTAGTGTCGGCGGTGGCGGTTACAACGGCGGTGTTATGAATTTTGGTGGTGCTTCCTCTTCATACCTTGGAGGAGGAGGATCCTCGTCCTCGTCCTCCTCCGCTTCTGGGGTTGGAGGAGATTGTAGCAGCGGTGTCGGCGGCGGCGGATTTTCGATGTCTGGTCATATGGGTTTCTCTGAAGTTGATCAACAAATGGTTGTGGCAACTCCTCCCTTTTGCCCTTCGGAAACCTCAAATTTAGAGTTTCAATCAGGCTATATTATAATATTCATAAATGGAGTTCCAACAGAAGTTCCAAAAGGACCAGTGGACATGAAGGCAATGTTTGGGCAAGAGACAGTGTTAGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCTCTGCACACTTTACAGCATGGTGAAAGTTATTTTCTGGTAATTAATTATTATTCCCCCACATTTTTCTCTCTCTGTTTCTACCTAAAATCCGGTTTGATAACTATTTAA | 837 | 45.64 | MTYNRFVMETHGDDPNSPNQSCERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQSSGGAIHYDGGSVGGGGYNGGVMNFGGASSSYLGGGGSSSSSSSASGVGGDCSSGVGGGGFSMSGHMGFSEVDQQMVVATPPFCPSETSNLEFQSGYIIIFINGVPTEVPKGPVDMKAMFGQETVLVHSSGLPVLTNEFGISLHTLQHGESYFLVINYYSPTFFSLCFYLKSGLITI | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 28214776 | 28221866 | - | Lsi03G016920.1 | Lsi03g01692 | 659442 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01692 | 278 | Pfam | Homeodomain | 29 | 89 | IPR001356 | GO:0003677 | |
Lsi03g01692 | 278 | ProSiteProfiles | 'Homeobox' domain profile. | 25 | 90 | IPR001356 | GO:0003677 | |
Lsi03g01692 | 278 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Lsi03g01692 | 278 | SMART | HOX_1 | 27 | 94 | IPR001356 | GO:0003677 | |
Lsi03g01692 | 278 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 11 | 258 | IPR044558 | GO:0003700|GO:0048830 | |
Lsi03g01692 | 278 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 11 | 258 | - | - | |
Lsi03g01692 | 278 | SUPERFAMILY | Homeodomain-like | 25 | 97 | IPR009057 | - | |
Lsi03g01692 | 278 | Gene3D | - | 29 | 96 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00272 | Lsi-Chr1:2431624 | Lsi03g01692 | Lsi-Chr3:28214776 | 5.20E-08 | dispersed | |
Lsi03g01692 | Lsi-Chr3:28214776 | Lsi02g01365 | Lsi-Chr2:18450158 | 2.12E-15 | dispersed | |
Lsi03g01692 | Lsi-Chr3:28214776 | Lsi02g00230 | Lsi-Chr2:1934707 | 4.62E-16 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25035 | PF00046 | Homeodomain | 7.60E-13 | CL0123 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01692 | - | - | csv:101207317 | 370.933 |