Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01696 ATGCAGCCCTCTCCCAATGGCTACCCTCAACCCACGTGCACCCTTCTCACGCGTGCGACCATGAATAACTTGACTGTTGAAACGGAAGATGTATTTTCCAGCTTGCTCGAGCTTGCTGCAAATGATGACATTGACGCCTTCAAGAGATCGATTGAGCGCGATCCTTCTGGTATTGATGAAATTGGTTTATGGTATGGCCGCTTACATGGTTCAAAGCAAATGACTAATGAGGAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCACTGAGGTTCTGAAGCTTATTCTCTCTCTTTCTTGTGCTGATGTAAACCGCGCCGTCGGTCTTGACAGGAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGATATTGTGAAGCGGCTCTTAGCTGCTGGTGCTGATCCTAATATGGTTGATGGGAATGGACATCGACCTGTCGATGTGATCGTTGCCCCCTTAAGGCATGGCGAGCTTAAATCAACCCTTACAGAACTTCTCAAGACAAACGGTTTGTCTGGTGATGGAAATCTTGATGTTTTAACAGGTGCTAGAAATTCATATTCTCCTCGTCCTTCATCTCCTCTGAATGTCCCCTCATCAGCTTCGGAGTTCGTTTCTTCTCCAACAAAGTCGAAACTAAGTGATTTTCCTATGTATTCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAATAGCATCTACTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGTGCTTACTCTCATGACTGGACAGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCCAGGAGGAGGGATCCAAGAAAGTTCCATTATAGCTGTGTACCATGTCCTGATTTTCGGAAGGGCGCTTGCAGACGGGGAGATATGTGCGAATATGCTCATGGGGTGTTTGAGTGCTGGCTGCACCCAGCACAATATCGAACTCGCCTTTGCAAAGATGGTACTAATTGCTCAAGAAGAGTCTGTTTCTTTGCACACACCACTGAGGAACTGCGCCCTCTGTATGTTTCAACTGGCTCTGCTGTTCCCTCACCGCGTTCTTGTACTTCTGGGGCTTCTGCCATGGATTATACTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCTCCATCTGCGAATGGCATGTCTCACTCGTCCGTGGCTTGGCCCCAACCGAATGTACCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTTTGAGCGCAAGAGACATGCCTGTAGAGGACTTCGATTATCTGAGTGATTTTGATATGCAACAACAGCAGCTCCTTAATGACTTGAATTGTCTTTCTCAACCACCGTTAAGTTCAAATTCATTGAACCGTTCTGGTCGGCTGAAAACTATGACCCCTTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAAGCTCTGGCTTCAGCTGTTTTCTCTCCTACACACAAATCAGCAGTTATCAATCAATTTCAACAGCAACAGAATATGTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCCTCTTTTGGAGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCATCTCACCGGTGGGCTCTCGCTTGTCTATGTTAGCTCAAAGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCACGTGAACTTGGTGCCAATTCTGCCTCTATTGTTGGTTCTCCTGCAAATTCTTGGTCCAAATGGGGACCTTCTAATGGAAGACCTGATTGGGCAGTCAATGCGGATGAAATGGGTAAACTTCGGCGATCATCGTCTTTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTGTCATGGGTTCAATCACTTGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAATTTGGGTGGCGATAGTTTTGTATCTTCTGGTGAGAGTTCTAACATAAACTCGCAAATGGAGTCGGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTCGATCATCTCGTCGCGCAACAGAACTGA 2172 46.55 MQPSPNGYPQPTCTLLTRATMNNLTVETEDVFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLHGSKQMTNEERTPLMVAATYGSTEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVDIVKRLLAAGADPNMVDGNGHRPVDVIVAPLRHGELKSTLTELLKTNGLSGDGNLDVLTGARNSYSPRPSSPLNVPSSASEFVSSPTKSKLSDFPMYSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYTTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNIQSSRLRSSLSARDMPVEDFDYLSDFDMQQQQLLNDLNCLSQPPLSSNSLNRSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPVGSRLSMLAQREKQQQFRSLSSRELGANSASIVGSPANSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGGDSFVSSGESSNINSQMESVDHAALGAWLEQMQLDHLVAQQN 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28284647 28289597 + Lsi03G016960.1 Lsi03g01696 659446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01696 723 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 21 720 - -
Lsi03g01696 723 SMART c3hfinal6 292 318 IPR000571 GO:0046872
Lsi03g01696 723 SMART c3hfinal6 327 350 IPR000571 GO:0046872
Lsi03g01696 723 SUPERFAMILY Ankyrin repeat 25 155 IPR036770 -
Lsi03g01696 723 ProSiteProfiles Zinc finger C3H1-type profile. 297 319 IPR000571 GO:0046872
Lsi03g01696 723 Gene3D - 28 171 IPR036770 -
Lsi03g01696 723 ProSiteProfiles Ankyrin repeat region circular profile. 112 146 - -
Lsi03g01696 723 Gene3D - 292 355 - -
Lsi03g01696 723 MobiDBLite consensus disorder prediction 668 693 - -
Lsi03g01696 723 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 317 IPR000571 GO:0046872
Lsi03g01696 723 Pfam Ankyrin repeats (3 copies) 73 146 IPR002110 GO:0005515
Lsi03g01696 723 PANTHER UNKEMPT FAMILY MEMBER 21 720 IPR045234 -
Lsi03g01696 723 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Lsi03g01696 723 SMART ANK_2a 112 144 IPR002110 GO:0005515
Lsi03g01696 723 SMART ANK_2a 77 107 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01206 Lsi-Chr3:22579385 Lsi03g01696 Lsi-Chr3:28284647 0 dispersed
Lsi03g01696 Lsi-Chr3:28284647 Lsi04g00984 Lsi-Chr4:10669560 2.58E-168 dispersed
Lsi11g01705 Lsi-Chr11:25202477 Lsi03g01696 Lsi-Chr3:28284647 7.27E-58 dispersed
Lsi03g01696 Lsi-Chr3:28284647 Lsi06g00248 Lsi-Chr6:2788692 3.22E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25036 PF12796 Ank_2 1.50E-09 CL0465 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01696 - - csv:101207646 1297.34