Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01705 ATGGATGACCCTTCCACTAACTTCTTCTTCACAAATCTCTTCAAATTCAACTCTCCCACCACTACCAATTTCCACCACTACCCTTCTTCTTCTTCTTCTTCAAACCCTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCCAATTTCTTCCACCACCACCACCACCATGTGCCACCGCGGCCATCGTCTCCGCCGCTCCGCCAAGCTCTACCTCTCCTTAGCCTTAGCCCTACAAGATCATCATCACAAGAAAAAAACAACAAGGAAGAGGAAAAGGAAGAAACTTTAATGAGAGTTGCACTTCATATAGGGTTACCAAGCCCTAGGGCTGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAAGAAATAGAAGAAGAAGAAGAAGAAGAAATAGAAGATCAAGAAGAAGAAGAAGTAGCAATTTCAGGATTGTGTTTGAGTAATAGTAGACTTAACAAAGGACAATATTGGATCCCAACTCCTTCACAAATCCTCATTGGACCTACTCAGTTCTCTTGTCCTGTTTGTTACAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAATACAGGAGAGGACCAGAATCGTTAAGAGGAACACAGCCAACAGGGATGTTAAGACTGCCATGTTATTGCTGCTCACCAGGTTGCCGCAACAACATTGACCATCCAAGAGCAAAGCCTTTAAAAGATTTCAGAACTCTTCAAACTCATTACAAACGCAAGCATGGAATCAAGCCTTTTATGTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAAAGATCTCTCAAAGACCACATCAAAGCCTTTGGAAATGGCCATGCTGCTTATAATCATTCTAATAATAATAATAATAATAACAACATTCCCGATCATCATCATCGTCGTCATCAGCATCATCATCGGCATCATCGTCTTCATGGGTTCGATGAAGAGGATGACCATGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 1086 41.9 MDDPSTNFFFTNLFKFNSPTTTNFHHYPSSSSSSNPFPPPPPPPPPNFFHHHHHHVPPRPSSPPLRQALPLLSLSPTRSSSQEKNNKEEEKEETLMRVALHIGLPSPRAEEEGEEEEEEEEEEDQEIEEEEEEEIEDQEEEEVAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNHSNNNNNNNNIPDHHHRRHQHHHRHHRLHGFDEEDDHAYSEVEQDHD 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28423079 28426593 + Lsi03G017050.1 Lsi03g01705 659455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01705 361 SUPERFAMILY beta-beta-alpha zinc fingers 171 197 IPR036236 -
Lsi03g01705 361 MobiDBLite consensus disorder prediction 310 361 - -
Lsi03g01705 361 Gene3D Classic Zinc Finger 174 197 - -
Lsi03g01705 361 MobiDBLite consensus disorder prediction 82 97 - -
Lsi03g01705 361 PANTHER ZINC FINGER PROTEIN WIP2 1 329 - -
Lsi03g01705 361 SUPERFAMILY beta-beta-alpha zinc fingers 241 279 IPR036236 -
Lsi03g01705 361 MobiDBLite consensus disorder prediction 33 47 - -
Lsi03g01705 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 279 IPR013087 -
Lsi03g01705 361 MobiDBLite consensus disorder prediction 341 361 - -
Lsi03g01705 361 SMART c2h2final6 175 197 IPR013087 -
Lsi03g01705 361 SMART c2h2final6 259 279 IPR013087 -
Lsi03g01705 361 ProSitePatterns Zinc finger C2H2 type domain signature. 177 197 IPR013087 -
Lsi03g01705 361 MobiDBLite consensus disorder prediction 110 143 - -
Lsi03g01705 361 MobiDBLite consensus disorder prediction 20 143 - -
Lsi03g01705 361 Coils Coil 106 142 - -
Lsi03g01705 361 Gene3D Classic Zinc Finger 236 318 - -
Lsi03g01705 361 PANTHER ZINC FINGER PROTEIN WIP2 1 329 IPR043584 GO:0003700|GO:0010468
Lsi03g01705 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 202 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01928 Lsi-Chr1:24228033 Lsi03g01705 Lsi-Chr3:28423079 4.06E-120 dispersed
Lsi03g00110 Lsi-Chr3:1578744 Lsi03g01705 Lsi-Chr3:28423079 8.72E-100 dispersed
Lsi03g01705 Lsi-Chr3:28423079 Lsi09g01027 Lsi-Chr9:14756298 4.86E-100 dispersed
Lsi03g01705 Lsi-Chr3:28423079 Lsi02g02581 Lsi-Chr2:32280466 2.04E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25039 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01705 - - csv:101208110 463.381