Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01713 ATGGCTGATTTCCCAGACTACCTTCTTCTTCTCTCTCTCTTGTTAATTTCATTTCTCTTCATTCAACTCATCTTCACCCGAAACCAACCCGACAAGCTTCGTCGTCCACCGAGCCCTCCGTCGTGGCCAGTGGTTGGCCACCTTCACCTCCTTGGTAGAATACCTCACCAAGCTCTTCACAAATTGTCATGTCAATATGGACCATTAATACATCTCTTCTTTGGCTCTAAGCCTTGTGTTATTGTCTCCAATTCAGAAATGGCTAAACAATTCCTCAAAATTAATGAATCCTCCTTTCTTAACCGACCCATTAGGCTCAACATAAACTATCTTACTTATGGCTCTGCAGACTTCACTTTTGCACCCTATGGACCCTATTGGAAGTTCTTGAAAAAGTTGTGCATGACCGAGCTCCTCGGTGGCCGGACCCTCGACCTCCACCGCCCCATAAGGGACGAGGAAATGAAGTTGTTTGTGCAAAGGATTCATGAACAAGCTACCGTAGGGAAGATGGTTGATGTTGGAGTTGACCTTTCAAGGTTGATGAACAACATAATATCGAGGATGGCATTGAGGAGACGATGCTCGGAGAAGGAAGATGGATCAGAAGAGGTCGGGAAGTTGGTGGGAGAGATGTGCGAGCTCGCCGGAGAACTTAACATCGCGGATATGATTTGGTTTTGTAAGAGATTGGATGTACAAGGGTTTGGAAGAAGAGTTAGAGATGTGAGAAGGAGGTATGATATAATGATGGAGAAGATAATAAAAGAGCATGAAGAAGAGAGGAAGAGGAAGAAAGAAGATGGTAAAGATGATGGAGTTAAGGATTTGCTTGATATTTTACTTGACATTTATGAAGATAAAAGCTCAGAAATTAAACTCACAAGAGACAATATCAAGGCTTTTGTTATGAATATATTCGGCGCCGGAACTGAAACATCAGCAGCGGCGACAGAGTGGGCATTAGCAGAGCTAATCAACAACCCATCCGCCATGGCCAAAGCAACTCAAGAACTCGACTCCGTCACCGGAAAAACCCGTCTCCTTCACGAATCCGATCTCCCCAATCTCCCCTATCTCCAAGCCGTCGTCAAAGAGACCCTCCGCCTCCATCCCACGGCGCCGCTCATCGTCCGGGAGGCCACCGAGCCCTGTGCCGTCGCCGGCTACCACATTCCAGCCAAAACCCGCCTGCTTGTCAACGTCTGGGCCATAGCCCGAGACCCGGCCCATTGGCCCGATCCATCCCGGTTCGACCCGGAGCGGTTCTTGAACCACCCGGCCGGTTCTGACCTACAGAGCTTTGATCTTATGCCGTTTGGGAGCGGTCGCCGGAGCTGCCCCGGCGCCGCCCTGGCTCTGGTGGCGGTGCCGGCGGTTCTCGGGAGGTTGATTCAGTGTTTTGAGTGGAGGGTTGACGGCGGTGGCGTTGATATGGAAGAAGGGCCAGGAATCTCTCTCCGGCGAGCTCATCCTTTGGTTGTAGCACCAGTGGCTAGGCTTCATCCTTCGGTTCTAGTAATGTCTTAA 1530 49.8 MADFPDYLLLLSLLLISFLFIQLIFTRNQPDKLRRPPSPPSWPVVGHLHLLGRIPHQALHKLSCQYGPLIHLFFGSKPCVIVSNSEMAKQFLKINESSFLNRPIRLNINYLTYGSADFTFAPYGPYWKFLKKLCMTELLGGRTLDLHRPIRDEEMKLFVQRIHEQATVGKMVDVGVDLSRLMNNIISRMALRRRCSEKEDGSEEVGKLVGEMCELAGELNIADMIWFCKRLDVQGFGRRVRDVRRRYDIMMEKIIKEHEEERKRKKEDGKDDGVKDLLDILLDIYEDKSSEIKLTRDNIKAFVMNIFGAGTETSAAATEWALAELINNPSAMAKATQELDSVTGKTRLLHESDLPNLPYLQAVVKETLRLHPTAPLIVREATEPCAVAGYHIPAKTRLLVNVWAIARDPAHWPDPSRFDPERFLNHPAGSDLQSFDLMPFGSGRRSCPGAALALVAVPAVLGRLIQCFEWRVDGGGVDMEEGPGISLRRAHPLVVAPVARLHPSVLVMS 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28504346 28507902 - Lsi03G017130.1 Lsi03g01713 659463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01713 509 Pfam Cytochrome P450 36 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 6 503 - -
Lsi03g01713 509 PANTHER CYTOCHROME P450 6 503 - -
Lsi03g01713 509 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 PRINTS P450 superfamily signature 447 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 SUPERFAMILY Cytochrome P450 36 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 Gene3D Cytochrome P450 25 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01713 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01713 Lsi-Chr3:28504346 Lsi07g00668 Lsi-Chr7:7169224 1.46E-133 dispersed
Lsi03g01713 Lsi-Chr3:28504346 Lsi03g01714 Lsi-Chr3:28510341 4.96E-92 tandem
Lsi01g01891 Lsi-Chr1:21807366 Lsi03g01713 Lsi-Chr3:28504346 0 transposed
Lsi02g02595 Lsi-Chr2:32371630 Lsi03g01713 Lsi-Chr3:28504346 4.71E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01713 K24188 - csv:101205411 783.867