Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g01714 | ATGACCTCCATCTTTGACAACACCACCTCTCCCTCTCAATTTTGGTGCTTCTGGTTCATCATTGCCCTCCTCCTCCATCTCCTCCTCAAAAAACATCTCTCAAACCCTAAACCCCCATCTCCTGGCACTCTCGCACCGGTCCCGAGCCCACCGGCCCTCCCTCTCATCGGCCATCTCCATCTCCTCACCCCAGTCCTCGTCACCTCATTCCAAACCCTAGCTTGTCGCTATGGTCCCCTCATCGAGCTCCGACTCGGCGCATCAAAGTGTGTCGTCGTCTCAACCGCTGCAGTCGCCAAAGACATCCTAAAAACCCACGAACACAACTTCCTCTCTCGACCGGAGTTCGGCGCCTCCGAGTACTTCATTTACCGAGGGTCGAGATTCGTCATGGCTCAATACGGACCCTATTGGCGATTCATGAAGAAGCTAACCATGACACGGCTTCTCTCGCCGCCGCAGTTGGCGGTCTCGACCGCCATCCGTAGCGACGAGATAGCAAAACTCGTGGAAAGAATAGAGGCAAATTCAAGGGAAAAGAAGCCCACAGATTTGAGATTGGAGTCTACTACTTTGACAAACAATATCATATCAAGGATGGTGTTTAGCACAAGGTGCTGTGGAGGGAAAGATGAGGCTCAAGAGATTAAGGATTTGGCTTGGAGGATCAATATGTTGGCTGGGAAGTTGAGTTTGGGTGATATTTTGGGACCTTTAAAAGTGTTTGATTTCTCCGGAAATGGAAAGAAATTTGTGAAAACTTTGAAGAAATTTGATGGGTTGGTGGAGAGGATAATGAAGGAGCATGAAGCTGCCAATAATGGTGCTGTGCTATGGGCAATGGGAGAGCTTCTAAATCGTCCAGAATCGATCCAAAAGCTAAGAAAAGAGATAATATCAGTGGTTGGAAACAAGAAGCAGGTCCAAGAATCCGACCTCCCCAACCTCCCATATCTCCGAGCAGTGGTCAATGAAACACTCCGTCTCCACCCGTCGGCGCCAATCATCATCAGGGAATGTTTAGATGACTGTTACATCAATGGCTCACTAATCAAGGCCAAAACTCGAGTATTGGTCAATGCATATGCCGTCATGAGAGACCCAGAGTCTTGGTCAGAGCCTGACAGGTTCTTGCCAGAGAGGTTTTTGGAAGGCTCCCATGAGAATATCGGAGGCCATCGGATGGAGATGAAAGGGCAGAATTTTCGTTACATTCCGTTTGGGAGTGGAAAGAGAGGCTGTCCTGGATCTTCCCTTGCATTGTTAGTTTTTCCATGTGCAATTGCGACCATGGTGCAACGATTTGATTGGAAGACAGGTGGGAATGACAGTGGCAACATTGATTTGACACTTGGGTCGGGATTTGCTGCAGAGATGGCAACGCCACTTGTCTGTTATGCAAACTCCATTGATGGGAGTGATTAA | 1425 | 48.7 | MTSIFDNTTSPSQFWCFWFIIALLLHLLLKKHLSNPKPPSPGTLAPVPSPPALPLIGHLHLLTPVLVTSFQTLACRYGPLIELRLGASKCVVVSTAAVAKDILKTHEHNFLSRPEFGASEYFIYRGSRFVMAQYGPYWRFMKKLTMTRLLSPPQLAVSTAIRSDEIAKLVERIEANSREKKPTDLRLESTTLTNNIISRMVFSTRCCGGKDEAQEIKDLAWRINMLAGKLSLGDILGPLKVFDFSGNGKKFVKTLKKFDGLVERIMKEHEAANNGAVLWAMGELLNRPESIQKLRKEIISVVGNKKQVQESDLPNLPYLRAVVNETLRLHPSAPIIIRECLDDCYINGSLIKAKTRVLVNAYAVMRDPESWSEPDRFLPERFLEGSHENIGGHRMEMKGQNFRYIPFGSGKRGCPGSSLALLVFPCAIATMVQRFDWKTGGNDSGNIDLTLGSGFAAEMATPLVCYANSIDGSD | 474 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 28510341 | 28514179 | - | Lsi03G017140.1 | Lsi03g01714 | 659464 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g01714 | 474 | PRINTS | E-class P450 group I signature | 360 | 384 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | PRINTS | E-class P450 group I signature | 74 | 93 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | PRINTS | E-class P450 group I signature | 192 | 210 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | PRINTS | E-class P450 group I signature | 414 | 437 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | PRINTS | E-class P450 group I signature | 320 | 338 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | PRINTS | E-class P450 group I signature | 98 | 119 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | PRINTS | E-class P450 group I signature | 404 | 414 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | Gene3D | Cytochrome P450 | 43 | 275 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 5 | 273 | - | - | |
| Lsi03g01714 | 474 | PANTHER | CYTOCHROME P450, FAMILY 712, SUBFAMILY A, POLYPEPTIDE 1 | 275 | 467 | - | - | |
| Lsi03g01714 | 474 | PRINTS | P450 superfamily signature | 405 | 414 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | PRINTS | P450 superfamily signature | 321 | 332 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | PRINTS | P450 superfamily signature | 286 | 299 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | PRINTS | P450 superfamily signature | 414 | 425 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | SUPERFAMILY | Cytochrome P450 | 44 | 465 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 407 | 416 | IPR017972 | GO:0005506|GO:0016705 | |
| Lsi03g01714 | 474 | PANTHER | CYTOCHROME P450, FAMILY 712, SUBFAMILY A, POLYPEPTIDE 1 | 5 | 273 | - | - | |
| Lsi03g01714 | 474 | Pfam | Cytochrome P450 | 277 | 448 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | Pfam | Cytochrome P450 | 48 | 273 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi03g01714 | 474 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 275 | 467 | - | - | |
| Lsi03g01714 | 474 | Gene3D | Cytochrome P450 | 276 | 452 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g01714 | Lsi-Chr3:28510341 | Lsi01g01891 | Lsi-Chr1:21807366 | 8.80E-117 | dispersed | |
| Lsi03g01713 | Lsi-Chr3:28504346 | Lsi03g01714 | Lsi-Chr3:28510341 | 4.96E-92 | tandem | |
| Lsi02g02596 | Lsi-Chr2:32375364 | Lsi03g01714 | Lsi-Chr3:28510341 | 2.49E-43 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g01714 | - | - | bhj:120091524 | 815.839 |