Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01716 ATGGCTTCTTCCAATATTAAAAGCACCTCCATCATCCAACAAGCAAACCAGCAAGAAGAAGAAAAACAACAACAACAACAACTTCTTCATCATCATCAACAACAACAACCTCAACTTCTACAAACTCCAAGCTTTGTCATCTCATCAAACTCCAAAAATTCCTCATTATTCAATTTCCAAAACCCCAATTTCCCTGATCATCATCATCATCATCATCAATTACCCTTCTCCATGAATCTCCCTTCCATCTCTTCAAATTTCTTAAGCAAAGATGGAGGAGGAGATGATTTGGGGGAATTGGATCAAGCTCTTTTTCTGTATCTTGATGGACAAGAACCCTCTACAACCACTACTCAAGACCAAAGACAGAACTCGGGTATGAGACCTCCGACGTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGACCCGTTACCAATAAAAGGAAATACAGCATTGATAAACCATAGTGATTCAAAGATCAAAGCATCTGAGCCGTCCAAAGAGTTGGCCAACCAACGCAGTAGCCATGGAGCCACTGCATCTGGACCACCCCCAACCCAAACTACAACAACCGAACCTCATCCCAAACCTCCTAAACGTGAGGCCAACAAAAAGGGGCTAACCTCAAGCTCAGAGCAAGAAGGACCCAAAACTCCAGACCCTAAGACCTTGAGAAGATTAGCTCAAAATCGAGAGGCCGCTAGAAAAAGCAGGCTTAGGAAAAAGGCGTATGTTCAGCAGTTAGAAATGAGTAGGATTAAGCTCACGCAGCTGGAGCAAGAGCTACAAAGAGCAAGAACTCAGGGCATGTTTCTGGGTGGAGGAGCCGCCATTTTAGGACCTGACCAAGGACTTCCCTCTGGCTTCCATAACCTCAGCTCCGATGCTGCGGTGTTCGACATTGAGTACGGGCGGTGGCAAGAGGAGCACCACCGACTGATGTGCGAGCTCCGAGCAGCGGTGCAAGAGCACCTACCGGAGAACGAGCTGCGATTGTTCGTGGACAGTTGTCTAGCCCATTACGACGAGGTTCTTAACTTGAAGATGATGGTGGCTAAGTCGGACGTCTTCCACCTTGTCTCCGGCATGTGGAAGACACCGGCGGAGAGATGCTTCATGTGGATGGGCGATTTTAGGCCGTCTGAGCTCATTAAGATAATAATGGGCCAAATAGAGCCATTAACAGAGCATCAAATATTGAACATTTGTGCATTGCAACAATCAACACAAGAGAGTGAAGAAGCATTGTCTCAAGGACTTGAAGCCCTAAATCAGTCTTTATCAGACACAATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTATATGGGCCAAATGACCTTAGCCATCAACAAGCTCTCTACTCTTGAAGGCTTTGTAAGACAGGCAGAGAATTTGAGACACCAAACGGTTCACCGATTGCAGCAAATGTTGACAACTCGACAAGCAGCAAGATGTTTATTAGCCATTGCTGAATATTTTCATAGGCTTCGAGCTTTGAGTTCCTTATGGTTGGCTCGTCCAAGGCAAGATTAA 1548 45.87 MASSNIKSTSIIQQANQQEEEKQQQQQLLHHHQQQQPQLLQTPSFVISSNSKNSSLFNFQNPNFPDHHHHHHQLPFSMNLPSISSNFLSKDGGGDDLGELDQALFLYLDGQEPSTTTTQDQRQNSGMRPPTLNIFPSQPMHVDPLPIKGNTALINHSDSKIKASEPSKELANQRSSHGATASGPPPTQTTTTEPHPKPPKREANKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQELQRARTQGMFLGGGAAILGPDQGLPSGFHNLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENELRLFVDSCLAHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFMWMGDFRPSELIKIIMGQIEPLTEHQILNICALQQSTQESEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQAENLRHQTVHRLQQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28531305 28540805 - Lsi03G017160.1 Lsi03g01716 659466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01716 515 CDD bZIP_HBP1b-like 223 275 - -
Lsi03g01716 515 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 98 514 - -
Lsi03g01716 515 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 226 241 IPR004827 GO:0003700|GO:0006355
Lsi03g01716 515 MobiDBLite consensus disorder prediction 1 38 - -
Lsi03g01716 515 Coils Coil 242 269 - -
Lsi03g01716 515 MobiDBLite consensus disorder prediction 111 132 - -
Lsi03g01716 515 Pfam Seed dormancy control 315 389 IPR025422 GO:0006351|GO:0043565
Lsi03g01716 515 MobiDBLite consensus disorder prediction 111 226 - -
Lsi03g01716 515 Coils Coil 15 35 - -
Lsi03g01716 515 ProSiteProfiles DOG1 domain profile. 297 511 IPR025422 GO:0006351|GO:0043565
Lsi03g01716 515 Pfam Basic region leucine zipper 220 264 IPR004827 GO:0003700|GO:0006355
Lsi03g01716 515 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 221 265 IPR004827 GO:0003700|GO:0006355
Lsi03g01716 515 SUPERFAMILY Leucine zipper domain 223 265 IPR046347 GO:0003700|GO:0006355
Lsi03g01716 515 MobiDBLite consensus disorder prediction 168 188 - -
Lsi03g01716 515 Gene3D - 222 272 - -
Lsi03g01716 515 PANTHER TRANSCRIPTION FACTOR TGA9 98 514 - -
Lsi03g01716 515 SMART brlzneu 219 299 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01716 K14431 TGA; transcription factor TGA - csv:101204923 852.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01716 Lsi-Chr3:28531305 Lsi04g00016 Lsi-Chr4:217909 1.74E-127 dispersed
Lsi03g01716 Lsi-Chr3:28531305 Lsi03g00118 Lsi-Chr3:1664079 8.06E-13 transposed
Lsi03g01716 Lsi-Chr3:28531305 Lsi10g01166 Lsi-Chr10:15933908 6.80E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1240 . Blo12g00600 . . . . . . Cmo06g00079 Cmo14g00514 . . . . . . Cpe08g01342 . . . . . . . . . . . . . . Cone3ag0081 Cone10ag0067 Cone13ag0546 Cone19ag0496 . . . Cme04g02220 . . Bda03g01602 . . . . Bma04g00464 . . . Cma06g00087 Cma14g00509 Car06g00074 Car14g00399 Cpe03g00385 . . . . . . . . Cla10g01652 Cam10g1699 Cec10g1751 Cco10g1716 Clacu10g1719 Cmu10g2471 Cre10g1850 Lsi03g01716 Csa03g03598 Chy04g01760 .
Vvi8g1325 . Blo12g00496 . . . Bpe03g01170 . Bma10g00152 Cmo06g00570 . . . . . . . Cpe08g00931 . . . . . . . . . . . . . . . Cone10ag0097 . . . Csa04g01321 . Cme04g01670 Blo07g01290 . . Bda05g01109 . . . . Sed02g0403 . . Cma06g00565 . Car06g00502 . . . Bhi11g02480 Tan08g1552 Cmetu04g0218 . Hepe05g0492 . . Cla10g01699 Cam10g1751 Cec10g1800 Cco10g1770 Clacu10g1769 Cmu10g2518 Cre10g1904 Lsi03g01716 Csa03g02929 Chy04g01760 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi07g01159 . 1 219 bZIP Transcription Factor Family AT2G35530 61.4 2.8e-58 223.0
Lsi04g01023 . 10 359 bZIP Transcription Factor Family AT2G40620 54.7 4.0e-80 295.4
Lsi11g01151 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.4e-38 155.2
Lsi10g00496 CCT 1 233 bZIP Transcription Factor Family AT4G35040 63.0 1.5e-65 246.5
Lsi11g01199 CCT 1 232 bZIP Transcription Factor Family AT4G35040 63.4 1.9e-60 229.6
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT5G06950 78.1 1.8e-132 469.2
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT5G06950 76.4 8.9e-132 466.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT5G06950 69.6 9.6e-118 420.2
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT5G06950 67.7 9.6e-110 393.7
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT5G06950 60.8 6.9e-92 334.3
Lsi03g00453 . 100 334 bZIP Transcription Factor Family AT5G06950 51.8 9.5e-57 217.6
Lsi08g00928 . 642 935 bZIP Transcription Factor Family AT1G08320 61.0 1.6e-97 353.2
Lsi03g01716 . 198 514 bZIP Transcription Factor Family AT1G08320 59.0 1.5e-95 346.7
Lsi04g00016 . 97 384 bZIP Transcription Factor Family AT1G08320 60.1 3.4e-92 335.5
Lsi08g00395 . 177 467 bZIP Transcription Factor Family AT1G08320 59.1 3.1e-90 328.9
Lsi03g01615 . 178 470 bZIP Transcription Factor Family AT1G08320 55.3 1.4e-82 303.5
Lsi03g00118 . 165 349 bZIP Transcription Factor Family AT1G08320 52.9 9.9e-68 254.2
Lsi10g01166 . 123 325 bZIP Transcription Factor Family AT1G08320 57.1 1.9e-63 240.0
Lsi10g00496 CCT 1 267 bZIP Transcription Factor Family AT2G16770 59.7 4.5e-67 251.5
Lsi11g01199 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.6 4.3e-62 235.0
Lsi08g00928 . 637 935 bZIP Transcription Factor Family AT5G06960 79.0 1.2e-122 436.4
Lsi04g00016 . 74 384 bZIP Transcription Factor Family AT5G06960 74.3 1.4e-118 422.9
Lsi08g00395 . 162 467 bZIP Transcription Factor Family AT5G06960 67.6 1.8e-105 379.4
Lsi03g01615 . 156 470 bZIP Transcription Factor Family AT5G06960 64.4 2.3e-97 352.4
Lsi03g01716 . 207 514 bZIP Transcription Factor Family AT5G06960 60.1 3.6e-90 328.6
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT5G06960 50.8 9.5e-59 224.2
Lsi11g01151 . 1 517 bZIP Transcription Factor Family AT4G38900 59.1 3.3e-131 465.7
Lsi11g01149 . 1 536 bZIP Transcription Factor Family AT4G38900 56.4 1.4e-126 450.3
Lsi11g01151 . 64 545 bZIP Transcription Factor Family AT2G21230 53.0 7.0e-99 358.2
Lsi11g01421 . 1 248 bZIP Transcription Factor Family AT2G42380 57.1 3.5e-57 218.8
Lsi08g01479 CCT,ECH 6 353 bZIP Transcription Factor Family AT1G45249 53.8 7.3e-83 304.7
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT3G12250 78.8 1.2e-133 473.0
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT3G12250 75.8 2.9e-130 461.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT3G12250 68.7 1.1e-116 416.8
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT3G12250 68.4 6.7e-111 397.5
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT3G12250 60.1 7.7e-91 330.9
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT3G12250 50.4 6.5e-58 221.5
Lsi08g00395 . 16 467 bZIP Transcription Factor Family AT1G68640 62.3 4.1e-143 505.0
Lsi08g00928 . 606 935 bZIP Transcription Factor Family AT1G68640 64.2 2.2e-112 402.9
Lsi04g00016 . 51 384 bZIP Transcription Factor Family AT1G68640 64.4 3.5e-110 395.6
Lsi03g01615 . 135 470 bZIP Transcription Factor Family AT1G68640 60.5 1.5e-100 363.6
Lsi03g01716 . 209 514 bZIP Transcription Factor Family AT1G68640 55.5 7.0e-87 318.2
Lsi08g00550 . 8 341 bZIP Transcription Factor Family AT1G43700 50.7 1.4e-58 223.8
Lsi05g02094 . 11 416 bZIP Transcription Factor Family AT2G46270 50.6 1.6e-81 300.1
Lsi05g01348 . 42 373 bZIP Transcription Factor Family AT2G31370 70.0 4.4e-109 391.7
Lsi05g01346 . 1 359 bZIP Transcription Factor Family AT2G31370 62.4 2.1e-103 372.9
Lsi04g02035 . 1 250 bZIP Transcription Factor Family AT3G58120 51.6 4.8e-41 165.2
Lsi08g00619 . 17 321 bZIP Transcription Factor Family AT3G56850 56.8 1.2e-71 266.9
Lsi07g01159 . 37 219 bZIP Transcription Factor Family AT1G32150 61.7 7.2e-56 214.9
Lsi05g01348 . 10 368 bZIP Transcription Factor Family AT1G06070 68.5 7.7e-120 427.6
Lsi05g01346 . 1 357 bZIP Transcription Factor Family AT1G06070 68.2 7.7e-120 427.6
Lsi08g00550 . 145 342 bZIP Transcription Factor Family AT1G06070 54.9 3.3e-38 156.4
Lsi11g01151 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 9.6e-38 154.8
Lsi08g01479 CCT,ECH 6 353 bZIP Transcription Factor Family AT1G45249 53.8 7.3e-83 304.7
Lsi07g01159 . 1 219 bZIP Transcription Factor Family AT2G35530 61.4 2.8e-58 223.0
Lsi04g01023 . 10 359 bZIP Transcription Factor Family AT2G40620 54.7 4.0e-80 295.4
Lsi11g01151 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.4e-38 155.2
Lsi10g00496 CCT 1 233 bZIP Transcription Factor Family AT4G35040 63.0 1.5e-65 246.5
Lsi11g01199 CCT 1 232 bZIP Transcription Factor Family AT4G35040 63.4 1.9e-60 229.6
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT5G06950 78.1 1.8e-132 469.2
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT5G06950 76.4 8.9e-132 466.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT5G06950 69.6 9.6e-118 420.2
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT5G06950 67.7 9.6e-110 393.7
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT5G06950 60.8 6.9e-92 334.3
Lsi03g00453 . 100 334 bZIP Transcription Factor Family AT5G06950 51.8 9.5e-57 217.6
Lsi08g00928 . 642 935 bZIP Transcription Factor Family AT1G08320 61.0 1.6e-97 353.2
Lsi03g01716 . 198 514 bZIP Transcription Factor Family AT1G08320 59.0 1.5e-95 346.7
Lsi04g00016 . 97 384 bZIP Transcription Factor Family AT1G08320 60.1 3.4e-92 335.5
Lsi08g00395 . 177 467 bZIP Transcription Factor Family AT1G08320 59.1 3.1e-90 328.9
Lsi03g01615 . 178 470 bZIP Transcription Factor Family AT1G08320 55.3 1.4e-82 303.5
Lsi03g00118 . 165 349 bZIP Transcription Factor Family AT1G08320 52.9 9.9e-68 254.2
Lsi10g01166 . 123 325 bZIP Transcription Factor Family AT1G08320 57.1 1.9e-63 240.0
Lsi10g00496 CCT 1 267 bZIP Transcription Factor Family AT2G16770 59.7 4.5e-67 251.5
Lsi11g01199 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.6 4.3e-62 235.0
Lsi08g00928 . 637 935 bZIP Transcription Factor Family AT5G06960 79.0 1.2e-122 436.4
Lsi04g00016 . 74 384 bZIP Transcription Factor Family AT5G06960 74.3 1.4e-118 422.9
Lsi08g00395 . 162 467 bZIP Transcription Factor Family AT5G06960 67.6 1.8e-105 379.4
Lsi03g01615 . 156 470 bZIP Transcription Factor Family AT5G06960 64.4 2.3e-97 352.4
Lsi03g01716 . 207 514 bZIP Transcription Factor Family AT5G06960 60.1 3.6e-90 328.6
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT5G06960 50.8 9.5e-59 224.2
Lsi11g01151 . 1 517 bZIP Transcription Factor Family AT4G38900 59.1 3.3e-131 465.7
Lsi11g01149 . 1 536 bZIP Transcription Factor Family AT4G38900 56.4 1.4e-126 450.3
Lsi11g01151 . 64 545 bZIP Transcription Factor Family AT2G21230 53.0 7.0e-99 358.2
Lsi11g01421 . 1 248 bZIP Transcription Factor Family AT2G42380 57.1 3.5e-57 218.8
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT3G12250 78.8 1.2e-133 473.0
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT3G12250 75.8 2.9e-130 461.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT3G12250 68.7 1.1e-116 416.8
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT3G12250 68.4 6.7e-111 397.5
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT3G12250 60.1 7.7e-91 330.9
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT3G12250 50.4 6.5e-58 221.5
Lsi08g00395 . 16 467 bZIP Transcription Factor Family AT1G68640 62.3 4.1e-143 505.0
Lsi08g00928 . 606 935 bZIP Transcription Factor Family AT1G68640 64.2 2.2e-112 402.9
Lsi04g00016 . 51 384 bZIP Transcription Factor Family AT1G68640 64.4 3.5e-110 395.6
Lsi03g01615 . 135 470 bZIP Transcription Factor Family AT1G68640 60.5 1.5e-100 363.6
Lsi03g01716 . 209 514 bZIP Transcription Factor Family AT1G68640 55.5 7.0e-87 318.2
Lsi08g00550 . 8 341 bZIP Transcription Factor Family AT1G43700 50.7 1.4e-58 223.8
Lsi05g02094 . 11 416 bZIP Transcription Factor Family AT2G46270 50.6 1.6e-81 300.1
Lsi05g01348 . 42 373 bZIP Transcription Factor Family AT2G31370 70.0 4.4e-109 391.7
Lsi05g01346 . 1 359 bZIP Transcription Factor Family AT2G31370 62.4 2.1e-103 372.9
Lsi04g02035 . 1 250 bZIP Transcription Factor Family AT3G58120 51.6 4.8e-41 165.2
Lsi08g00619 . 17 321 bZIP Transcription Factor Family AT3G56850 56.8 1.2e-71 266.9
Lsi07g01159 . 37 219 bZIP Transcription Factor Family AT1G32150 61.7 7.2e-56 214.9
Lsi05g01348 . 10 368 bZIP Transcription Factor Family AT1G06070 68.5 7.7e-120 427.6
Lsi05g01346 . 1 357 bZIP Transcription Factor Family AT1G06070 68.2 7.7e-120 427.6
Lsi08g00550 . 145 342 bZIP Transcription Factor Family AT1G06070 54.9 3.3e-38 156.4
Lsi11g01151 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 9.6e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005443 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 2 1 1 1 1 1 3 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25042 PF14144 DOG1 2.80E-31 No_clan Lsi TF