Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01716 ATGGCTTCTTCCAATATTAAAAGCACCTCCATCATCCAACAAGCAAACCAGCAAGAAGAAGAAAAACAACAACAACAACAACTTCTTCATCATCATCAACAACAACAACCTCAACTTCTACAAACTCCAAGCTTTGTCATCTCATCAAACTCCAAAAATTCCTCATTATTCAATTTCCAAAACCCCAATTTCCCTGATCATCATCATCATCATCATCAATTACCCTTCTCCATGAATCTCCCTTCCATCTCTTCAAATTTCTTAAGCAAAGATGGAGGAGGAGATGATTTGGGGGAATTGGATCAAGCTCTTTTTCTGTATCTTGATGGACAAGAACCCTCTACAACCACTACTCAAGACCAAAGACAGAACTCGGGTATGAGACCTCCGACGTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGACCCGTTACCAATAAAAGGAAATACAGCATTGATAAACCATAGTGATTCAAAGATCAAAGCATCTGAGCCGTCCAAAGAGTTGGCCAACCAACGCAGTAGCCATGGAGCCACTGCATCTGGACCACCCCCAACCCAAACTACAACAACCGAACCTCATCCCAAACCTCCTAAACGTGAGGCCAACAAAAAGGGGCTAACCTCAAGCTCAGAGCAAGAAGGACCCAAAACTCCAGACCCTAAGACCTTGAGAAGATTAGCTCAAAATCGAGAGGCCGCTAGAAAAAGCAGGCTTAGGAAAAAGGCGTATGTTCAGCAGTTAGAAATGAGTAGGATTAAGCTCACGCAGCTGGAGCAAGAGCTACAAAGAGCAAGAACTCAGGGCATGTTTCTGGGTGGAGGAGCCGCCATTTTAGGACCTGACCAAGGACTTCCCTCTGGCTTCCATAACCTCAGCTCCGATGCTGCGGTGTTCGACATTGAGTACGGGCGGTGGCAAGAGGAGCACCACCGACTGATGTGCGAGCTCCGAGCAGCGGTGCAAGAGCACCTACCGGAGAACGAGCTGCGATTGTTCGTGGACAGTTGTCTAGCCCATTACGACGAGGTTCTTAACTTGAAGATGATGGTGGCTAAGTCGGACGTCTTCCACCTTGTCTCCGGCATGTGGAAGACACCGGCGGAGAGATGCTTCATGTGGATGGGCGATTTTAGGCCGTCTGAGCTCATTAAGATAATAATGGGCCAAATAGAGCCATTAACAGAGCATCAAATATTGAACATTTGTGCATTGCAACAATCAACACAAGAGAGTGAAGAAGCATTGTCTCAAGGACTTGAAGCCCTAAATCAGTCTTTATCAGACACAATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTATATGGGCCAAATGACCTTAGCCATCAACAAGCTCTCTACTCTTGAAGGCTTTGTAAGACAGGCAGAGAATTTGAGACACCAAACGGTTCACCGATTGCAGCAAATGTTGACAACTCGACAAGCAGCAAGATGTTTATTAGCCATTGCTGAATATTTTCATAGGCTTCGAGCTTTGAGTTCCTTATGGTTGGCTCGTCCAAGGCAAGATTAA 1548 45.87 MASSNIKSTSIIQQANQQEEEKQQQQQLLHHHQQQQPQLLQTPSFVISSNSKNSSLFNFQNPNFPDHHHHHHQLPFSMNLPSISSNFLSKDGGGDDLGELDQALFLYLDGQEPSTTTTQDQRQNSGMRPPTLNIFPSQPMHVDPLPIKGNTALINHSDSKIKASEPSKELANQRSSHGATASGPPPTQTTTTEPHPKPPKREANKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQELQRARTQGMFLGGGAAILGPDQGLPSGFHNLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENELRLFVDSCLAHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFMWMGDFRPSELIKIIMGQIEPLTEHQILNICALQQSTQESEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQAENLRHQTVHRLQQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28531305 28540805 - Lsi03G017160.1 Lsi03g01716 659466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01716 515 CDD bZIP_HBP1b-like 223 275 - -
Lsi03g01716 515 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 98 514 - -
Lsi03g01716 515 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 226 241 IPR004827 GO:0003700|GO:0006355
Lsi03g01716 515 MobiDBLite consensus disorder prediction 1 38 - -
Lsi03g01716 515 Coils Coil 242 269 - -
Lsi03g01716 515 MobiDBLite consensus disorder prediction 111 132 - -
Lsi03g01716 515 Pfam Seed dormancy control 315 389 IPR025422 GO:0006351|GO:0043565
Lsi03g01716 515 MobiDBLite consensus disorder prediction 111 226 - -
Lsi03g01716 515 Coils Coil 15 35 - -
Lsi03g01716 515 ProSiteProfiles DOG1 domain profile. 297 511 IPR025422 GO:0006351|GO:0043565
Lsi03g01716 515 Pfam Basic region leucine zipper 220 264 IPR004827 GO:0003700|GO:0006355
Lsi03g01716 515 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 221 265 IPR004827 GO:0003700|GO:0006355
Lsi03g01716 515 SUPERFAMILY Leucine zipper domain 223 265 IPR046347 GO:0003700|GO:0006355
Lsi03g01716 515 MobiDBLite consensus disorder prediction 168 188 - -
Lsi03g01716 515 Gene3D - 222 272 - -
Lsi03g01716 515 PANTHER TRANSCRIPTION FACTOR TGA9 98 514 - -
Lsi03g01716 515 SMART brlzneu 219 299 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01716 Lsi-Chr3:28531305 Lsi04g00016 Lsi-Chr4:217909 1.74E-127 dispersed
Lsi03g01716 Lsi-Chr3:28531305 Lsi03g00118 Lsi-Chr3:1664079 8.06E-13 transposed
Lsi03g01716 Lsi-Chr3:28531305 Lsi10g01166 Lsi-Chr10:15933908 6.80E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25042 PF14144 DOG1 2.80E-31 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01716 K14431 - csv:101204923 852.047