Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01722 | ATGCTCCAACAGCGTCTGGTTACGTATTTCAGTGTCGTCGTCTATTCGACGACTCTGACTTCGCTGGCTTGGGCGTTCACTAATCCGCCGGATGTTATAGCTCTTCAGGATCTGTATAGTGCTATGAACTACCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGATGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCTGTAATATACCTTAAACTCCATGGACTAAATATCACTGGTAATCTTGGAGGGCAGCTCAGCAACCTCATCGATTTGAAACAACTGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCGCACAACTTGCCTCCTAATGCGACTCACATAAATATGGCATTCAACCATTTAAGCCAAAATATTCCACATACTTTATCTTACATGGGAAATCTCCGACATCTAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGGAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTATCATATAATGACTTCGCTGGAGATTTGCCAAGTTCATTTGGTTCCCTGACAAACATCACTAGACTGTTCTTGCAGAATAACAAATTCACTGGATCAGTTGCCTACTTGTCTCGCCTTCCATTGATTGACTTGAACCTCCAAGACAATTATTTTAGTGGCATTATTCCAGAAAATTTTAGAAATATTCCAAATTTGTGGATTGGGGGCAATAGGTTCCGTCCAGAAGTCAATTCTCCACCCTGGGACTTTCCCCTGGAAAAAGCACCTATGGTGCAGAACATCAGTGGCCCTCCAACAACCAAGTCAAATGCCATCCAGAATTATCCCTCTCGGGGTCTAGTCAGGCATGAGAAGAAGAGGCTTGGCCCGGGTGGAATTGTTCTCCTGGTTGGGGGGCTAACACTAGTAGTTAGCTTTGCAGCTATATTTTTCGTATTTGCCATGAAGAAAGTGCATGAAAAGAAAATAAATTTGAAGATTGGCAATATGTTACCTCGTTCTCTTCCTCTGGGCAAAGCTGAAGATGGTTCGTCTACTGGAACAGAAGAGAGCTCACAAAGCTTTCCCCTGAGTTCTCTACTCATGGGTGGTCCAAGGCCTATACCTTTATTAAATCACACGAGAACTGAGAAAGTTTCTGGAAGAAAAGGTTTTTCAAAGAGATGCAGGCTCCCAGTGAGAACAAAAATTTACACTCTTGCAGAGCTTCAATCCACTACAAACAACTTCAGTCAAGAGAATCTTCTGGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTCTGGCGGTGAAAAATATCAACATGGGAGAGCTCTCGTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATTGTTACACTGCTTGGATATTGTGTAGAGCATGGACAACATATGCTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGACGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTCGCTAGGGCTTTAGATTATCTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAGTCTGAAGGCTGCCAACATCTTACTGGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGACAAATAGAGTTAAAACGAAGGCTTCTGAGATTGTCAGTGGTGATAGAGGCTACTTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCATTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGGAGAAAACCATTTGACAATTCGAAACGGAGGAAGGAGCAATCACTGGTGAAATGGGCTTCATCTCGGCTTTATGACAACGAGAGTTTAGAACAGATGGTTGATCCAGGCATTCAAGGAACATTTTCCTCCAAGGCTCTCTCACACTTTGTCGATATTATCTCCCTTTGTATACAGCCTGTGAAGGAATTCCGACCACCAATGTCTGAAATAGTGGAACATCTAACAAATCTTCAAAGAAAGATGGAAATGGCAAAACGTGCTGCGACAGAGGGAACTGAAGTGGATCCTTTTGAGAAATCTTTTCGTTCTACCAATACTGGCTTCATAAATTCACCAGCACACAGCTATGCTTCCACCTCATTTTAG | 2217 | 43.12 | MLQQRLVTYFSVVVYSTTLTSLAWAFTNPPDVIALQDLYSAMNYPLELKGWRKEGGDPCDESWTGVSCSGSSVIYLKLHGLNITGNLGGQLSNLIDLKQLDVSSNRLTGEIPHNLPPNATHINMAFNHLSQNIPHTLSYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFAGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSRLPLIDLNLQDNYFSGIIPENFRNIPNLWIGGNRFRPEVNSPPWDFPLEKAPMVQNISGPPTTKSNAIQNYPSRGLVRHEKKRLGPGGIVLLVGGLTLVVSFAAIFFVFAMKKVHEKKINLKIGNMLPRSLPLGKAEDGSSTGTEESSQSFPLSSLLMGGPRPIPLLNHTRTEKVSGRKGFSKRCRLPVRTKIYTLAELQSTTNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINMGELSFTEEEQFLDVVWTASRLRHPNIVTLLGYCVEHGQHMLGYEYVRNLSLDDALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCSLKAANILLDEELMPRICDCGLSVLRPLVTNRVKTKASEIVSGDRGYFAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKRRKEQSLVKWASSRLYDNESLEQMVDPGIQGTFSSKALSHFVDIISLCIQPVKEFRPPMSEIVEHLTNLQRKMEMAKRAATEGTEVDPFEKSFRSTNTGFINSPAHSYASTSF | 738 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 28585611 | 28592570 | - | Lsi03G017220.1 | Lsi03g01722 | 659472 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01722 | 738 | Gene3D | Transferase(Phosphotransferase) domain 1 | 493 | 716 | - | - | |
Lsi03g01722 | 738 | SUPERFAMILY | L domain-like | 27 | 238 | - | - | |
Lsi03g01722 | 738 | Coils | Coil | 684 | 704 | - | - | |
Lsi03g01722 | 738 | Pfam | Protein kinase domain | 416 | 690 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi03g01722 | 738 | Pfam | Leucine rich repeat N-terminal domain | 29 | 69 | IPR013210 | - | |
Lsi03g01722 | 738 | MobiDBLite | consensus disorder prediction | 349 | 364 | - | - | |
Lsi03g01722 | 738 | Gene3D | Phosphorylase Kinase; domain 1 | 378 | 492 | - | - | |
Lsi03g01722 | 738 | SUPERFAMILY | Protein kinase-like (PK-like) | 392 | 692 | IPR011009 | - | |
Lsi03g01722 | 738 | Pfam | Leucine rich repeat | 118 | 177 | IPR001611 | GO:0005515 | |
Lsi03g01722 | 738 | MobiDBLite | consensus disorder prediction | 341 | 367 | - | - | |
Lsi03g01722 | 738 | ProSiteProfiles | Protein kinase domain profile. | 415 | 693 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi03g01722 | 738 | SMART | LRR_typ_2 | 94 | 118 | IPR003591 | - | |
Lsi03g01722 | 738 | SMART | LRR_typ_2 | 140 | 163 | IPR003591 | - | |
Lsi03g01722 | 738 | SMART | LRR_typ_2 | 164 | 187 | IPR003591 | - | |
Lsi03g01722 | 738 | SMART | LRR_typ_2 | 188 | 211 | IPR003591 | - | |
Lsi03g01722 | 738 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 | 5 | 709 | - | - | |
Lsi03g01722 | 738 | Gene3D | Ribonuclease Inhibitor | 28 | 260 | IPR032675 | - | |
Lsi03g01722 | 738 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 5 | 709 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02850 | Lsi-Chr2:34678825 | Lsi03g01722 | Lsi-Chr3:28585611 | 5.21E-164 | dispersed | |
Lsi03g01722 | Lsi-Chr3:28585611 | Lsi11g01525 | Lsi-Chr11:23648953 | 1.04E-38 | dispersed | |
Lsi08g00380 | Lsi-Chr8:10465480 | Lsi03g01722 | Lsi-Chr3:28585611 | 5.20E-89 | dispersed | |
Lsi03g01721 | Lsi-Chr3:28575599 | Lsi03g01722 | Lsi-Chr3:28585611 | 0 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83502 | PF00069 | Pkinase | 3.20E-35 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01722 | - | - | csv:101204194 | 1296.57 |