Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01722 ATGCTCCAACAGCGTCTGGTTACGTATTTCAGTGTCGTCGTCTATTCGACGACTCTGACTTCGCTGGCTTGGGCGTTCACTAATCCGCCGGATGTTATAGCTCTTCAGGATCTGTATAGTGCTATGAACTACCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGATGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCTGTAATATACCTTAAACTCCATGGACTAAATATCACTGGTAATCTTGGAGGGCAGCTCAGCAACCTCATCGATTTGAAACAACTGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCGCACAACTTGCCTCCTAATGCGACTCACATAAATATGGCATTCAACCATTTAAGCCAAAATATTCCACATACTTTATCTTACATGGGAAATCTCCGACATCTAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGGAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTATCATATAATGACTTCGCTGGAGATTTGCCAAGTTCATTTGGTTCCCTGACAAACATCACTAGACTGTTCTTGCAGAATAACAAATTCACTGGATCAGTTGCCTACTTGTCTCGCCTTCCATTGATTGACTTGAACCTCCAAGACAATTATTTTAGTGGCATTATTCCAGAAAATTTTAGAAATATTCCAAATTTGTGGATTGGGGGCAATAGGTTCCGTCCAGAAGTCAATTCTCCACCCTGGGACTTTCCCCTGGAAAAAGCACCTATGGTGCAGAACATCAGTGGCCCTCCAACAACCAAGTCAAATGCCATCCAGAATTATCCCTCTCGGGGTCTAGTCAGGCATGAGAAGAAGAGGCTTGGCCCGGGTGGAATTGTTCTCCTGGTTGGGGGGCTAACACTAGTAGTTAGCTTTGCAGCTATATTTTTCGTATTTGCCATGAAGAAAGTGCATGAAAAGAAAATAAATTTGAAGATTGGCAATATGTTACCTCGTTCTCTTCCTCTGGGCAAAGCTGAAGATGGTTCGTCTACTGGAACAGAAGAGAGCTCACAAAGCTTTCCCCTGAGTTCTCTACTCATGGGTGGTCCAAGGCCTATACCTTTATTAAATCACACGAGAACTGAGAAAGTTTCTGGAAGAAAAGGTTTTTCAAAGAGATGCAGGCTCCCAGTGAGAACAAAAATTTACACTCTTGCAGAGCTTCAATCCACTACAAACAACTTCAGTCAAGAGAATCTTCTGGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTCTGGCGGTGAAAAATATCAACATGGGAGAGCTCTCGTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATTGTTACACTGCTTGGATATTGTGTAGAGCATGGACAACATATGCTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGACGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTCGCTAGGGCTTTAGATTATCTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAGTCTGAAGGCTGCCAACATCTTACTGGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGACAAATAGAGTTAAAACGAAGGCTTCTGAGATTGTCAGTGGTGATAGAGGCTACTTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCATTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGGAGAAAACCATTTGACAATTCGAAACGGAGGAAGGAGCAATCACTGGTGAAATGGGCTTCATCTCGGCTTTATGACAACGAGAGTTTAGAACAGATGGTTGATCCAGGCATTCAAGGAACATTTTCCTCCAAGGCTCTCTCACACTTTGTCGATATTATCTCCCTTTGTATACAGCCTGTGAAGGAATTCCGACCACCAATGTCTGAAATAGTGGAACATCTAACAAATCTTCAAAGAAAGATGGAAATGGCAAAACGTGCTGCGACAGAGGGAACTGAAGTGGATCCTTTTGAGAAATCTTTTCGTTCTACCAATACTGGCTTCATAAATTCACCAGCACACAGCTATGCTTCCACCTCATTTTAG 2217 43.12 MLQQRLVTYFSVVVYSTTLTSLAWAFTNPPDVIALQDLYSAMNYPLELKGWRKEGGDPCDESWTGVSCSGSSVIYLKLHGLNITGNLGGQLSNLIDLKQLDVSSNRLTGEIPHNLPPNATHINMAFNHLSQNIPHTLSYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFAGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSRLPLIDLNLQDNYFSGIIPENFRNIPNLWIGGNRFRPEVNSPPWDFPLEKAPMVQNISGPPTTKSNAIQNYPSRGLVRHEKKRLGPGGIVLLVGGLTLVVSFAAIFFVFAMKKVHEKKINLKIGNMLPRSLPLGKAEDGSSTGTEESSQSFPLSSLLMGGPRPIPLLNHTRTEKVSGRKGFSKRCRLPVRTKIYTLAELQSTTNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINMGELSFTEEEQFLDVVWTASRLRHPNIVTLLGYCVEHGQHMLGYEYVRNLSLDDALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCSLKAANILLDEELMPRICDCGLSVLRPLVTNRVKTKASEIVSGDRGYFAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKRRKEQSLVKWASSRLYDNESLEQMVDPGIQGTFSSKALSHFVDIISLCIQPVKEFRPPMSEIVEHLTNLQRKMEMAKRAATEGTEVDPFEKSFRSTNTGFINSPAHSYASTSF 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28585611 28592570 - Lsi03G017220.1 Lsi03g01722 659472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01722 738 Gene3D Transferase(Phosphotransferase) domain 1 493 716 - -
Lsi03g01722 738 SUPERFAMILY L domain-like 27 238 - -
Lsi03g01722 738 Coils Coil 684 704 - -
Lsi03g01722 738 Pfam Protein kinase domain 416 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01722 738 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Lsi03g01722 738 MobiDBLite consensus disorder prediction 349 364 - -
Lsi03g01722 738 Gene3D Phosphorylase Kinase; domain 1 378 492 - -
Lsi03g01722 738 SUPERFAMILY Protein kinase-like (PK-like) 392 692 IPR011009 -
Lsi03g01722 738 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Lsi03g01722 738 MobiDBLite consensus disorder prediction 341 367 - -
Lsi03g01722 738 ProSiteProfiles Protein kinase domain profile. 415 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01722 738 SMART LRR_typ_2 94 118 IPR003591 -
Lsi03g01722 738 SMART LRR_typ_2 140 163 IPR003591 -
Lsi03g01722 738 SMART LRR_typ_2 164 187 IPR003591 -
Lsi03g01722 738 SMART LRR_typ_2 188 211 IPR003591 -
Lsi03g01722 738 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 5 709 - -
Lsi03g01722 738 Gene3D Ribonuclease Inhibitor 28 260 IPR032675 -
Lsi03g01722 738 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 709 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02850 Lsi-Chr2:34678825 Lsi03g01722 Lsi-Chr3:28585611 5.21E-164 dispersed
Lsi03g01722 Lsi-Chr3:28585611 Lsi11g01525 Lsi-Chr11:23648953 1.04E-38 dispersed
Lsi08g00380 Lsi-Chr8:10465480 Lsi03g01722 Lsi-Chr3:28585611 5.20E-89 dispersed
Lsi03g01721 Lsi-Chr3:28575599 Lsi03g01722 Lsi-Chr3:28585611 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83502 PF00069 Pkinase 3.20E-35 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01722 - - csv:101204194 1296.57