Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01722 ATGCTCCAACAGCGTCTGGTTACGTATTTCAGTGTCGTCGTCTATTCGACGACTCTGACTTCGCTGGCTTGGGCGTTCACTAATCCGCCGGATGTTATAGCTCTTCAGGATCTGTATAGTGCTATGAACTACCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGATGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCTGTAATATACCTTAAACTCCATGGACTAAATATCACTGGTAATCTTGGAGGGCAGCTCAGCAACCTCATCGATTTGAAACAACTGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCGCACAACTTGCCTCCTAATGCGACTCACATAAATATGGCATTCAACCATTTAAGCCAAAATATTCCACATACTTTATCTTACATGGGAAATCTCCGACATCTAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGGAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTATCATATAATGACTTCGCTGGAGATTTGCCAAGTTCATTTGGTTCCCTGACAAACATCACTAGACTGTTCTTGCAGAATAACAAATTCACTGGATCAGTTGCCTACTTGTCTCGCCTTCCATTGATTGACTTGAACCTCCAAGACAATTATTTTAGTGGCATTATTCCAGAAAATTTTAGAAATATTCCAAATTTGTGGATTGGGGGCAATAGGTTCCGTCCAGAAGTCAATTCTCCACCCTGGGACTTTCCCCTGGAAAAAGCACCTATGGTGCAGAACATCAGTGGCCCTCCAACAACCAAGTCAAATGCCATCCAGAATTATCCCTCTCGGGGTCTAGTCAGGCATGAGAAGAAGAGGCTTGGCCCGGGTGGAATTGTTCTCCTGGTTGGGGGGCTAACACTAGTAGTTAGCTTTGCAGCTATATTTTTCGTATTTGCCATGAAGAAAGTGCATGAAAAGAAAATAAATTTGAAGATTGGCAATATGTTACCTCGTTCTCTTCCTCTGGGCAAAGCTGAAGATGGTTCGTCTACTGGAACAGAAGAGAGCTCACAAAGCTTTCCCCTGAGTTCTCTACTCATGGGTGGTCCAAGGCCTATACCTTTATTAAATCACACGAGAACTGAGAAAGTTTCTGGAAGAAAAGGTTTTTCAAAGAGATGCAGGCTCCCAGTGAGAACAAAAATTTACACTCTTGCAGAGCTTCAATCCACTACAAACAACTTCAGTCAAGAGAATCTTCTGGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTCTGGCGGTGAAAAATATCAACATGGGAGAGCTCTCGTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATTGTTACACTGCTTGGATATTGTGTAGAGCATGGACAACATATGCTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGACGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTCGCTAGGGCTTTAGATTATCTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAGTCTGAAGGCTGCCAACATCTTACTGGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGACAAATAGAGTTAAAACGAAGGCTTCTGAGATTGTCAGTGGTGATAGAGGCTACTTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCATTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGGAGAAAACCATTTGACAATTCGAAACGGAGGAAGGAGCAATCACTGGTGAAATGGGCTTCATCTCGGCTTTATGACAACGAGAGTTTAGAACAGATGGTTGATCCAGGCATTCAAGGAACATTTTCCTCCAAGGCTCTCTCACACTTTGTCGATATTATCTCCCTTTGTATACAGCCTGTGAAGGAATTCCGACCACCAATGTCTGAAATAGTGGAACATCTAACAAATCTTCAAAGAAAGATGGAAATGGCAAAACGTGCTGCGACAGAGGGAACTGAAGTGGATCCTTTTGAGAAATCTTTTCGTTCTACCAATACTGGCTTCATAAATTCACCAGCACACAGCTATGCTTCCACCTCATTTTAG 2217 43.12 MLQQRLVTYFSVVVYSTTLTSLAWAFTNPPDVIALQDLYSAMNYPLELKGWRKEGGDPCDESWTGVSCSGSSVIYLKLHGLNITGNLGGQLSNLIDLKQLDVSSNRLTGEIPHNLPPNATHINMAFNHLSQNIPHTLSYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFAGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSRLPLIDLNLQDNYFSGIIPENFRNIPNLWIGGNRFRPEVNSPPWDFPLEKAPMVQNISGPPTTKSNAIQNYPSRGLVRHEKKRLGPGGIVLLVGGLTLVVSFAAIFFVFAMKKVHEKKINLKIGNMLPRSLPLGKAEDGSSTGTEESSQSFPLSSLLMGGPRPIPLLNHTRTEKVSGRKGFSKRCRLPVRTKIYTLAELQSTTNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINMGELSFTEEEQFLDVVWTASRLRHPNIVTLLGYCVEHGQHMLGYEYVRNLSLDDALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCSLKAANILLDEELMPRICDCGLSVLRPLVTNRVKTKASEIVSGDRGYFAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKRRKEQSLVKWASSRLYDNESLEQMVDPGIQGTFSSKALSHFVDIISLCIQPVKEFRPPMSEIVEHLTNLQRKMEMAKRAATEGTEVDPFEKSFRSTNTGFINSPAHSYASTSF 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28585611 28592570 - Lsi03G017220.1 Lsi03g01722 659472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01722 738 Gene3D Transferase(Phosphotransferase) domain 1 493 716 - -
Lsi03g01722 738 SUPERFAMILY L domain-like 27 238 - -
Lsi03g01722 738 Coils Coil 684 704 - -
Lsi03g01722 738 Pfam Protein kinase domain 416 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01722 738 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Lsi03g01722 738 MobiDBLite consensus disorder prediction 349 364 - -
Lsi03g01722 738 Gene3D Phosphorylase Kinase; domain 1 378 492 - -
Lsi03g01722 738 SUPERFAMILY Protein kinase-like (PK-like) 392 692 IPR011009 -
Lsi03g01722 738 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Lsi03g01722 738 MobiDBLite consensus disorder prediction 341 367 - -
Lsi03g01722 738 ProSiteProfiles Protein kinase domain profile. 415 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01722 738 SMART LRR_typ_2 94 118 IPR003591 -
Lsi03g01722 738 SMART LRR_typ_2 140 163 IPR003591 -
Lsi03g01722 738 SMART LRR_typ_2 164 187 IPR003591 -
Lsi03g01722 738 SMART LRR_typ_2 188 211 IPR003591 -
Lsi03g01722 738 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 5 709 - -
Lsi03g01722 738 Gene3D Ribonuclease Inhibitor 28 260 IPR032675 -
Lsi03g01722 738 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 709 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01722 - - - csv:101204194 1296.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02850 Lsi-Chr2:34678825 Lsi03g01722 Lsi-Chr3:28585611 5.21E-164 dispersed
Lsi03g01722 Lsi-Chr3:28585611 Lsi11g01525 Lsi-Chr11:23648953 1.04E-38 dispersed
Lsi08g00380 Lsi-Chr8:10465480 Lsi03g01722 Lsi-Chr3:28585611 5.20E-89 dispersed
Lsi03g01721 Lsi-Chr3:28575599 Lsi03g01722 Lsi-Chr3:28585611 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1247 . . . . Bpe04g01463 . Bma04g01505 . Cmo06g00081 . . . . . . . Cpe08g01391 . . . . . . . . . . . . . . . . . Cone19ag0495 . . . Cme04g02226 . Blo09g00427 Bda03g01600 . . . . . . . . Cma06g00088 . Car06g00077 Car14g00396 Cpe03g00382 . . . . . . . . Cla10g01655 . . . . . . Lsi03g01722 Csa03g03593 Chy04g01764 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g01525 . 34 784 Strubbelig Receptor Gene Family AT4G03390 62.1 1.9e-204 709.5
Lsi01g00341 . 17 751 Strubbelig Receptor Gene Family AT4G03390 54.1 4.2e-164 575.5
Lsi03g01722 . 9 735 Strubbelig Receptor Gene Family AT5G06820 53.5 5.7e-187 651.4
Lsi02g01068 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.7 3.5e-85 313.2
Lsi02g02850 . 425 740 Strubbelig Receptor Gene Family AT1G11130 50.3 1.1e-80 298.1
Lsi03g01722 . 9 735 Strubbelig Receptor Gene Family AT5G06820 53.5 5.7e-187 651.4
Lsi11g01525 . 34 784 Strubbelig Receptor Gene Family AT4G03390 62.1 1.9e-204 709.5
Lsi01g00341 . 17 751 Strubbelig Receptor Gene Family AT4G03390 54.1 4.2e-164 575.5
Lsi07g00634 . 1 765 Strubbelig Receptor Gene Family AT1G53730 56.2 1.3e-204 709.9
Lsi02g02850 . 1 767 Strubbelig Receptor Gene Family AT1G53730 55.5 1.3e-180 630.2
Lsi02g02850 . 6 757 Strubbelig Receptor Gene Family AT3G14350 51.2 3.9e-161 565.5
Lsi02g01068 . 149 711 Strubbelig Receptor Gene Family AT4G22130 63.8 8.8e-180 627.1
Lsi02g02850 . 419 759 Strubbelig Receptor Gene Family AT4G22130 60.1 4.2e-113 405.6
Lsi07g00634 . 404 781 Strubbelig Receptor Gene Family AT4G22130 54.5 1.5e-110 397.1
Lsi11g01525 . 481 776 Strubbelig Receptor Gene Family AT4G22130 61.6 2.0e-107 386.7
Lsi01g00341 . 464 751 Strubbelig Receptor Gene Family AT4G22130 60.5 2.2e-98 356.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83502 PF00069 Pkinase 3.20E-35 CL0016 Lsi PK