Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01734 ATGGAAATCGACTCACGGAAGAATCTCCAGCGCAAGCAGTGTACCTATGAAATATCGGATGAGCAGTACAAGATTCAGAAGGAGACATACAAGGGCCAGCAATACAGTCACATTTACTTTGCTCGACTCCACTTGATGAGAACGATACTCCATTCACTTGTCTCTAAGTGGAAACCTCATTTACCTGGTATTTGTTTTCCCTTTTCATTTTATAAGCAGGGTGGAAGTAGATTTTGTTATGTGATGCATGGGCACATCATTATTCTTGGCTTTAGGTATCTTAACACATACAAAAAGTTTAGTGGTTTTATTGATGTGGTTGAACTCAAGGTAGGATGGATTTGGACCAATCCTTACTTTGAACAGTTTTTTTTTCAGTTTTTCGTCTTGCATGTAGAACTTAGAAGCAACTTCACGAGGAATGGGTTTTATGGGTTAATTTGCGCTGTATTGGGATTGGAGGAAGGCAAGGAATGTGTCATTGTTGGTACCGTCTACAAGCACATGAAACTTAAACCTACCATTCTGGACGAGTATTCAAAGGAGAGATCTGCTGCCCCACTTGTTAAGCCACACAACTTTATGCACCCAGATGATCATCTAGTATTGGAAGATGAAAGTGGGAGAGTAAAGCTTTCTGGGGCTGTGCTTTTACCTTCTGTATATGTAACAGGGATTGTCCTTGCATTGCATGGAAAGGAAACTTGCGTTGGTGACTTTTTCGTTTTGGACATCCTAGAAGCTGGTTTACCACCCCAGATAGAGCGGCCACTCATATCAAGCGAAGATAAGTACGTGATTTTTGTGTCAGGCCTAAGTATTGGGAGTAGTATCTCTAATCCTCTACAGTTTCAGCTCCTTGTTGATCATATAACAGGACATTTAGGGGATGAGAAGTTGCCAAAATTTTTAGAACCATTAACTGGACAGGAACAAGGGATTGCGGCTCAAATAGTTCATGTTGTCATTTGCGGGGATTCTGTTGAAATTCCTCGAGGAATTTTAAATGGGCAGCATTTGTCTGCAAAGGACCAAACAAAGCTGACAGAACCGCTTAAAGAGCTAGATATCCTATTGAATCAGCTTGCTGCAGGTTTACCTGTGGACATCATGCCGGGTTCCAGTGACCCAGCCAATTTTTCCTTGCCTCAGCAGGTCTTTTCTTTACAGCTGGAACTCCCGCTTTTCATCCCTGGTTTTGATTTGTCAATAATGTCATTTTCTTTGCAGCCTTTGCACAGATGCCTTTTTCCTGGATCATCAGCTTATAACACTTTCAGATCTTGCACTAACCCTCATTGTTTTGAGCTTGATAATTTCAGGCAAGTCAATAATGTCAGCCTGATAGGGTTTCTTGGAACATCTGGTCAGAATGTAGATGATCTCGAGAAGTACTCAGAGGCTAAAGATAAACTTGAATTTATGGAGAGGACTTTGAAATGGAGGCATCTGGCACCAACTGCTCCAAATACTCTTGGTTGTTACCCATTCACTGACCGAGATCCTTTCCTGATTGAGAGCTGTCCTCATGTTTATTTTATTGGCAATCAGGACAAATTTGATACTCGCTTAATAAAGGGAGCTGAAGGGCAAATGGTAAGACTCATTGCGATTCCAAGATTTTGCGAGAAGGGGGTTGCCGTGATGGTAATTTTCTTTTACTTCAATTCACCTTTCAATATTGTGGCTGCAATGCTGTCAAAAATCAAAGCATGTTGGTTACAAAGAGAATCAGTATATCTTTTCCAATGGTTATCACTTATCAGTTATCACGTCTTGGATAATGGATATGCAGCATCAGGGAGCATGAGACTGTTGAATTATTTTGGTTTTAAATGCTTTTTGGTTCCAGAAACTATATTGTCTGAAATAATGATGAGGTTGATAAGCATTAATCCCATTGATGACACGGTTGTGGCAAGAAGTTGCTGTGCTCAACAAACTCTGGCCCCAATTTGTTTGTTGAACTTTTTAATGTTCATGCAATCAAATCACATCTGCGTCATCATTTTTATTGAAGACTTCATTAAAGTTGAGGAAGGATATGGATTTTTCTTTCTTCTTCTTTTTTTGGGTATAATAGTCTTCCTCCCTTTACAGCTTAACTTGAGAAACCTTGACTGCCACACTCTGAGTTTTGGGACTGAATTCAGC 2154 40.25 MEIDSRKNLQRKQCTYEISDEQYKIQKETYKGQQYSHIYFARLHLMRTILHSLVSKWKPHLPGICFPFSFYKQGGSRFCYVMHGHIIILGFRYLNTYKKFSGFIDVVELKVGWIWTNPYFEQFFFQFFVLHVELRSNFTRNGFYGLICAVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSAAPLVKPHNFMHPDDHLVLEDESGRVKLSGAVLLPSVYVTGIVLALHGKETCVGDFFVLDILEAGLPPQIERPLISSEDKYVIFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKLPKFLEPLTGQEQGIAAQIVHVVICGDSVEIPRGILNGQHLSAKDQTKLTEPLKELDILLNQLAAGLPVDIMPGSSDPANFSLPQQVFSLQLELPLFIPGFDLSIMSFSLQPLHRCLFPGSSAYNTFRSCTNPHCFELDNFRQVNNVSLIGFLGTSGQNVDDLEKYSEAKDKLEFMERTLKWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQDKFDTRLIKGAEGQMVRLIAIPRFCEKGVAVMVIFFYFNSPFNIVAAMLSKIKACWLQRESVYLFQWLSLISYHVLDNGYAASGSMRLLNYFGFKCFLVPETILSEIMMRLISINPIDDTVVARSCCAQQTLAPICLLNFLMFMQSNHICVIIFIEDFIKVEEGYGFFFLLLFLGIIVFLPLQLNLRNLDCHTLSFGTEFS 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28725393 28731202 + Lsi03G017340.1 Lsi03g01734 659484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01734 718 Pfam DNA polymerase alpha/epsilon subunit B 266 521 IPR007185 GO:0003677|GO:0006260
Lsi03g01734 718 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 146 387 IPR024826 -
Lsi03g01734 718 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 401 550 IPR024826 -
Lsi03g01734 718 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 6 62 IPR024826 -
Lsi03g01734 718 CDD MPP_PolD2_C 265 550 IPR041863 -
Lsi03g01734 718 Gene3D - 396 553 - -
Lsi03g01734 718 Gene3D - 253 391 - -
Lsi03g01734 718 Gene3D - 130 248 - -
Lsi03g01734 718 Pfam DNA polymerase delta subunit OB-fold domain 34 245 IPR040663 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01734 K02328 - csv:101221438 672.544