Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01736 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGGCGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCTTTAGAGGACCCTTTGTTGTGGAGCAGAGAGCTTGAAAAGCACTCTTATGGGGAATTTTCTTTTGCTGTGGTTCAGGCTAATGAGGTAATTGAGGATAATAGTCAGGTTGAGACTGGCCCTGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAGGAATCTAATGAGACTTGCTCAAGAAAATGGAAACATAACCGAAGGTATTCTTCGAAGTGCATTTTCTGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGTCGGTCATGGGGAATAAAACCAACAATTGCAGCTATGGGATCTTGTTGCCTGGTGGGAGTTATCTGGAGAGGTACATTATACGTCGGTAACGTCGGTGATTCCCGGGCTGTTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCACAATGCAAGTATTGAGGAGGTTAGACAAGAACTTAGGTCCTTGCATCCTGATGACTCACATATCGTTGTTATGAAGCATGGAGTCTGGCGTATTAAAGGCATAATTCAGTTGAACATTATTGTAAAAGTGGGGACATGCATTAAATACATCGAAACATGCTTCACAACCTTAAATTACAATCCAGCTGCTAAAAGTGAAAAGAGTGGAAAGGAATTGACACGTTTGATGTCGCTGCTTGTAATTTTCGAACCGAAATGGAAAATTGTTAAAAGTTGTATCTTTGCATACATTTGGATGTTTTCTGGTGTGCCCCTTCCTGTGTTCGTGTGCTTAATTTGGTTTTCAATCATTGTGTTTACTAGTGTTTTGAAATTTGAGTCAATTCCATGCCCTCATATTGCATTTACAATCATAGATCCACTTCGTTTGGGCGTTTCCAGATCGATAGGTGATGCATATTTAAAAAAGCCAGAGTTTTCTCTCGATCCATCCTTTCCACGATTCCACCTTGCGGAGCCTCTTCGACGGCCTGTTCTTACTGCAGAACCATCGTTAAGTACAAGAGTTCTACAACCTAATGACAAATTTCTCATATTTGCATCTGATGGCCTCTGGGAGCATCTAACAAATCAACAAGCTGTCGAGATTGTGTATAATAACCCAAGAGCAGGAATTGCAAAAAGACTCATTAAAACAGCCCTAACTGAGGCTGCAAGGAAGAGGGAGATGAGATACGATGATCTGAAGAAGCTCGAAAAGGGCATACGACGGTTTTTTCATGATGATATCACAGTTGTTGTCATCTTTGTGGACCATGAGTTGCAAGGGAAGAAGGCACGTGTGCCAGAATTGTCTGTTCGTGGGTTTACCGATACCGTTGGACCGTCAAATTTCAATGTTCTTCGAAGCATCGATGAGAATGGAAGGTCTGTTGGCTGA 1497 42.35 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDPLLWSRELEKHSYGEFSFAVVQANEVIEDNSQVETGPDATFVGVYDGHGGPDASRFICDHLFRNLMRLAQENGNITEGILRSAFSATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLYVGNVGDSRAVIGSLGKSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQLNIIVKVGTCIKYIETCFTTLNYNPAAKSEKSGKELTRLMSLLVIFEPKWKIVKSCIFAYIWMFSGVPLPVFVCLIWFSIIVFTSVLKFESIPCPHIAFTIIDPLRLGVSRSIGDAYLKKPEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTRVLQPNDKFLIFASDGLWEHLTNQQAVEIVYNNPRAGIAKRLIKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFVDHELQGKKARVPELSVRGFTDTVGPSNFNVLRSIDENGRSVG 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28745448 28748698 + Lsi03G017360.1 Lsi03g01736 659486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01736 498 Pfam Protein phosphatase 2C 69 220 IPR001932 -
Lsi03g01736 498 Pfam Protein phosphatase 2C 329 424 IPR001932 -
Lsi03g01736 498 CDD PP2Cc 47 456 IPR001932 -
Lsi03g01736 498 PANTHER ALPHABET, ISOFORM E-RELATED 6 223 - -
Lsi03g01736 498 PANTHER ALPHABET, ISOFORM E-RELATED 331 476 - -
Lsi03g01736 498 Gene3D - 35 466 IPR036457 -
Lsi03g01736 498 ProSiteProfiles PPM-type phosphatase domain profile. 49 456 IPR001932 -
Lsi03g01736 498 SMART PP2C_4 43 454 IPR001932 -
Lsi03g01736 498 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169
Lsi03g01736 498 SUPERFAMILY PP2C-like 53 457 IPR036457 -
Lsi03g01736 498 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 6 223 - -
Lsi03g01736 498 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 331 476 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01736 Lsi-Chr3:28745448 Lsi03g02069 Lsi-Chr3:32001668 2.81E-54 dispersed
Lsi03g01736 Lsi-Chr3:28745448 Lsi10g00506 Lsi-Chr10:7237062 4.83E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01736 K01102 - csv:101222146 448.743