Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01737 ATGTTCACCCTGGTCAACGAGAGGAGAGGATCGTCCGATGTGAAGGGCATAACGGTCCAGGAGAAGGCGATGACCGAAAAGTTAGACAGCTGGATCCAACGAGAATGTGACGCGTGCATAGAGACCGTAGATCAGAGATTCCAAATAGACGGTCAGGATTTGCGGAAAGCAACAATGGAACGTCTGTTAACATGTTACAATGTGTTAATTTCTACGTGTAAGAGAATTCTAGGAATCCTTATTTCATATCGGGGGCTTGATCCGGAAGATGATCAACGATTCACGATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCTTGAACCCCAAGGCGAATAGAGAGAAAATGACCCAAATTATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGTAAACAGATCTATTACCTTTTTCCTTATGTTTTGTATCTTTTCTTTTTACAAAGGAGATGGATGAAAACTAAAGATATTAAGTTTCATTGTCCAAGGAGCTGTTCAATTGATGTAAAAAGGTTCCTCCCCTCTATCAAAGTACATGTATTTTTGATACCTTCTTCTATAGCGTTAGCAATCATGTTGTTTGATATATTTTATTTTATTTTATTGGTGCCTTGCTTTTGCTTCTCATTTATTTATATTGTGGGTTGTTTTGAACGTGTAGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTTTAGACCTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCGGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTACGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCCTCTTCCAGCCATCCATGATAGGAATGGAAGCAGCTGGTATTCATGAAACCACATACAATTCTATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTATGGTAACATTGTCCTTAGTGGTGGTTCCACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTCTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1689 44.17 MFTLVNERRGSSDVKGITVQEKAMTEKLDSWIQRECDACIETVDQRFQIDGQDLRKATMERLLTCYNVLISTCKRILGILISYRGLDPEDDQRFTMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGKQIYYLFPYVLYLFFLQRRWMKTKDIKFHCPRSCSIDVKRFLPSIKVHVFLIPSSIALAIMLFDIFYFILLVPCFCFSFIYIVGCFERVGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28750428 28754368 - Lsi03G017370.1 Lsi03g01737 659487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01737 562 Gene3D - 337 505 - -
Lsi03g01737 562 Gene3D Actin; Chain A, domain 2 131 168 - -
Lsi03g01737 562 PANTHER ACTIN 3 96 247 - -
Lsi03g01737 562 PANTHER ACTIN 3 334 561 - -
Lsi03g01737 562 SUPERFAMILY Actin-like ATPase domain 337 562 IPR043129 -
Lsi03g01737 562 PANTHER ACTIN 96 247 IPR004000 -
Lsi03g01737 562 ProSitePatterns Actins and actin-related proteins signature. 201 213 IPR020902 -
Lsi03g01737 562 ProSitePatterns Actins signature 1. 150 160 IPR004001 -
Lsi03g01737 562 CDD NBD_sugar-kinase_HSP70_actin 105 249 - -
Lsi03g01737 562 PANTHER ACTIN 334 561 IPR004000 -
Lsi03g01737 562 ProSitePatterns Actins signature 2. 543 551 IPR004001 -
Lsi03g01737 562 Pfam Actin 100 562 IPR004000 -
Lsi03g01737 562 SUPERFAMILY Actin-like ATPase domain 100 243 IPR043129 -
Lsi03g01737 562 SMART actin_3 102 562 IPR004000 -
Lsi03g01737 562 Gene3D Actin; Chain A, domain 4 369 455 - -
Lsi03g01737 562 Gene3D - 99 272 - -
Lsi03g01737 562 Gene3D - 506 560 - -
Lsi03g01737 562 PRINTS Actin signature 123 132 IPR004000 -
Lsi03g01737 562 PRINTS Actin signature 146 157 IPR004000 -
Lsi03g01737 562 PRINTS Actin signature 212 225 IPR004000 -
Lsi03g01737 562 PRINTS Actin signature 237 256 IPR004000 -
Lsi03g01737 562 PRINTS Actin signature 158 180 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01737 Lsi-Chr3:28750428 Lsi10g01374 Lsi-Chr10:17888505 3.68E-106 dispersed
Lsi03g01737 Lsi-Chr3:28750428 Lsi01g01425 Lsi-Chr1:12390072 2.89E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01737 K10355 - psom:113310417 442.965