Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01741 ATGAGCAGTTGTCAAGCAACAGTCAGAGTTCTCCTGCTGGCCACCGTCTTCTTCGGCTGCACCATCAACCTCACACTTTCCTTCTATTTTAACTTTCCAATCTTCTCTAACAATAACGAGACGGAGGTCATTTTGACTAACCATGCTCGCATGTTCCTTAACGCCATCCAAATCACACCAGACATCCGAGGAGCTCCGATCGACTATGAGTGTGGAAGAGCCGTCTACAGAAGGCAATTCAAGCTGAGAAACAACGGTAAAACCGCATCTTTTAGTACTAACTTTGTGCTTGACATGAGCCCGCAAACATCGCCTGGGGGAGGCGAAGGAATGGCCTTCATACTCACCGCCGATGCTTATCCTCCATACGGCAGCAATGGACAATGGCTAGGAACTGTCGGTCCCGACACAAATGGGAAGTCAGAGGCGAATATAGTGGCCATCGAATTTGACACCAGGAAGAACTTCCCAGAAGATATCGATAGCAACCATGTGGGCTTAAATGTGAATAGTATCATATCGATTGTACAACAGCCATTATCGAGCTTCAGCGTTAATCTGACATCTGCCAGGGATGTTTATGGGATAATCAAATATGATGGGGCAAACATTTCCATCTACGTTTCCATGTCCAACAAAACAGAAGACCAACTGAAAAATCTTGTCATTTCACGATCCTTAGACCTCTCTATCCTCCCAGACGAGGTTTACGTGGGATTCTCTGCTTCAACAAGCAATTACACACAGTTAAACACTCTGAAATCGTGGCAATTCTATGGCACAGATTTTGGTCGACCCCGAAAGTGGGTTTGGTTCACAGTACCTGGAGTCTTAACCTTTTGTGGGGCTGTCCTTGCCTTCATCTTCTGGGAGAGGAGACGTCGACTGAATCGTTTGGAGGAGGCATACGGATCAGGCATAGAAGATCAGCTTCAAGATTTCTCCATAGCCCCAAGAGCCCAAAAGTTCAGATTAAGAGAACTCAAGAAGGCAACAGACAATTTTGATCCTAAGAACAGGCTTGGACAAGGTGGTTTTGGAACCGTTTACAGGGGAATCTTGATGAATAAAGAGGTAGCAGTCAAGAGAATCTCAAAGGATTCACGTCAAGGGAAGCAAGAGTTCATTGCAGAAGTTGCTACTATTGGTAGCCTACATCACAAAAACCTCGTAAAGCTAACTGGATGGTGCTACGAGAAGAGAGATCTTCTGCTTGTATATGAGTACATGCCTAATGGCAGCTTGGACAAGCTGATATTTGGCTACAGTAAGATTGATGGGAATGGAATGTTGTCCGCACCCAACTGGGCAACCAGGCGAAACATAATCTATGGGGTGGCTGAGGCTTTGGATTATCTTCACAATGGATGTGAGAAGACAATTCTGCATAGAGACATAAAGTCATCCAACGTCATGTTAGACTCAAAATTTGAAGCTAAGTTGGGAGATTTCGGATTGGCTCGAACAATATGTCGAACCGAACAGACCCATCACTCAACAAGAGAGATAGCAGGAACACCAGGCTACATGGCTCCAGAGACTTTTCTAACCAGTAGAGCTACGAGAGAAACAGATGTATATGCCTTTGGAGTTCTTATTCTAGAAGTTATATGCAGAAGAAGGCCTGGAAATCCATCTGAGCTTGGTGGCTACGATGGCAGTCTCGCGCATTGGGCATGGGAGTTTCACAGGGAAGGGAAAATTGTTGAAGCTGTGGATGAGAGAATCGAAGGACAATTCGTTAAAGAAGAAATGGAGTATCTATTAATTCTGGGGTTAGCTTGTTGTCAACCTAACCCCATCCAAAGGCCCACCATGAAAAATGTTTTGCAGGTGCTCAAGGGGGAAGCAAACCCACCAATTTTACCCAGTGAAAGGCCTTCATTTGTGTGGCCTCCCATACCCCCATCATTCAAAGAAGATGCAAACAACTTGTCAAAAGAAAGCCAGCTTACTCTATTCACAGAACTTACAGGAAGATAA 1983 44.93 MSSCQATVRVLLLATVFFGCTINLTLSFYFNFPIFSNNNETEVILTNHARMFLNAIQITPDIRGAPIDYECGRAVYRRQFKLRNNGKTASFSTNFVLDMSPQTSPGGGEGMAFILTADAYPPYGSNGQWLGTVGPDTNGKSEANIVAIEFDTRKNFPEDIDSNHVGLNVNSIISIVQQPLSSFSVNLTSARDVYGIIKYDGANISIYVSMSNKTEDQLKNLVISRSLDLSILPDEVYVGFSASTSNYTQLNTLKSWQFYGTDFGRPRKWVWFTVPGVLTFCGAVLAFIFWERRRRLNRLEEAYGSGIEDQLQDFSIAPRAQKFRLRELKKATDNFDPKNRLGQGGFGTVYRGILMNKEVAVKRISKDSRQGKQEFIAEVATIGSLHHKNLVKLTGWCYEKRDLLLVYEYMPNGSLDKLIFGYSKIDGNGMLSAPNWATRRNIIYGVAEALDYLHNGCEKTILHRDIKSSNVMLDSKFEAKLGDFGLARTICRTEQTHHSTREIAGTPGYMAPETFLTSRATRETDVYAFGVLILEVICRRRPGNPSELGGYDGSLAHWAWEFHREGKIVEAVDERIEGQFVKEEMEYLLILGLACCQPNPIQRPTMKNVLQVLKGEANPPILPSERPSFVWPPIPPSFKEDANNLSKESQLTLFTELTGR 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28779658 28781640 - Lsi03G017410.1 Lsi03g01741 659491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01741 660 ProSiteProfiles Protein kinase domain profile. 335 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01741 660 PANTHER - 6 650 - -
Lsi03g01741 660 SUPERFAMILY Protein kinase-like (PK-like) 320 632 IPR011009 -
Lsi03g01741 660 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 259 IPR013320 -
Lsi03g01741 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Lsi03g01741 660 Gene3D Transferase(Phosphotransferase) domain 1 410 619 - -
Lsi03g01741 660 CDD lectin_legume_LecRK_Arcelin_ConA 28 258 IPR001220 GO:0030246
Lsi03g01741 660 Gene3D - 26 260 - -
Lsi03g01741 660 SMART serkin_6 335 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01741 660 Pfam Protein kinase domain 338 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01741 660 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 6 650 - -
Lsi03g01741 660 CDD STKc_IRAK 341 615 - -
Lsi03g01741 660 Gene3D Phosphorylase Kinase; domain 1 320 409 - -
Lsi03g01741 660 Pfam Legume lectin domain 30 261 IPR001220 GO:0030246
Lsi03g01741 660 ProSitePatterns Protein kinases ATP-binding region signature. 341 362 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01741 Lsi-Chr3:28779658 Lsi03g01748 Lsi-Chr3:28882733 0 dispersed
Lsi03g01741 Lsi-Chr3:28779658 Lsi03g01742 Lsi-Chr3:28787879 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83503 PF00069 Pkinase 1.30E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01741 - - mcha:111024852 984.556