Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01745 ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCGAATTTGGTTCCAAATGAAGATGTGAATTTAGCTGATTTGACAGAGGATCCTGTAACTGTTCATAGATTTGGGGAAGCTATCCGGTTTAGGACGAGGCAACGGTGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATTACAATGGAATTGAGTGAAATCATGGTCAATTCAGGTAATGGGAATTCATTGCAGCCATTACAGCCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGACAGGGAAAACGTGTGAAATTAACAATGAAGCTTTGGAAGATGAAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGGGACCCCGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACAAAGAACGTGACTCCAATTTATGGGCGTGGCAGCAGTACCCCTGTGACTGAGGAGGATGCTACACTTAAGATTCCTCTGAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGGCAAACCATCCAGAGGACTGCACTTAGTTTCCCAGTGGACGATGTGATTCGACGATTAGGAAACAGATTCGATTTCAATCGTGATCTAGACCAACCGCCAGAGACAGACAGTTCACATGAAACATTTGGTAGATCTCCAACATTGTTGAATAGGATTTTAACATCCAGGGGCATTCGTAGAGATCAAATTTCATTGCCCCCTCATGATGATGTAGGAGATTTAGCACACACTGATGTGTCTAGCATTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTTACTTCTGCATTTAATTCCGCTGATAGGCTTCCAGATGGTTTTTTGTATACTGATCCCCTTCTCATTTCTAGAAGTCAAGAGACGCCTCCTCCACCTGTCGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCTATTTCAACATCATCCTCCAGAAGGAGAAATGATGCTTTACAAGTTTCTGATGTAGACAGTGGAAACTCTCGAGCTCCCAGACGGAGAAGATTGGCTTGA 1287 43.43 MGDEIFDAMNLDLNLGPIPEPLSNLVPNEDVNLADLTEDPVTVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNSGNGNSLQPLQPGEGSITAEERKNETGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSSTPVTEEDATLKIPLRPHARKVESLRQTIQRTALSFPVDDVIRRLGNRFDFNRDLDQPPETDSSHETFGRSPTLLNRILTSRGIRRDQISLPPHDDVGDLAHTDVSSIEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLLISRSQETPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDALQVSDVDSGNSRAPRRRRLA 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28822855 28824141 + Lsi03G017450.1 Lsi03g01745 659495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01745 428 MobiDBLite consensus disorder prediction 85 109 - -
Lsi03g01745 428 SUPERFAMILY RING/U-box 139 196 - -
Lsi03g01745 428 ProSitePatterns Zinc finger RING-type signature. 158 167 IPR017907 -
Lsi03g01745 428 SMART ring_2 143 183 IPR001841 -
Lsi03g01745 428 MobiDBLite consensus disorder prediction 397 417 - -
Lsi03g01745 428 PANTHER OS01G0830200 PROTEIN 20 425 - -
Lsi03g01745 428 Pfam Zinc finger, C3HC4 type (RING finger) 143 188 - -
Lsi03g01745 428 CDD RING-HC_AtRMA_like 141 185 - -
Lsi03g01745 428 MobiDBLite consensus disorder prediction 397 428 - -
Lsi03g01745 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 198 IPR013083 -
Lsi03g01745 428 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Lsi03g01745 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 425 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01051 Lsi-Chr1:8701448 Lsi03g01745 Lsi-Chr3:28822855 5.43E-28 dispersed
Lsi03g01745 Lsi-Chr3:28822855 Lsi01g00319 Lsi-Chr1:2821120 2.80E-25 dispersed
Lsi03g01745 Lsi-Chr3:28822855 Lsi08g01421 Lsi-Chr8:22453337 1.01E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01745 K10666 - csv:101220497 782.326