Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01746 ATGGAGTTGGGTTTGAGCCTTGGAGATCATCCTCCTTCCAATTCCAATAAGCCATTTGGGTTTCTCTCTAAGCCTCTTTCTTCTTCTTCTTCTTCATCTCTCATGGCTTTGGGATTTTGTGTTGGTTTAATCGGACATCACTCTGCTTCTGCTTCTGCTTCCGCTTCCGCTTCTGCTTCGGTTCAAGATGATGATGAAGAAGAAGAAGAAGAGGAAGATGATAATAATGATCACAAAACGGTTCTTCCCGGTTCAGCTTCCGGTTTGGATCCACCGGTTCAGCTCGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCTTCTTCTTCCCTTCCTTTTCCATGGCTTTCTCATCACTTGATGGCGGAAGTGGGTAGTTCAGAGGGAGGGGAAAGGGTAGAGTTGGATGTGAGCCGGGTGGCTATGGCGGCGGAGGAGACAGAAGACAGGGTGGTGGCGGCGTTGTCATCTCCGAACAGTACGGTGTCGTGTTTCCAAATGGAATTTGGAGTGAGAAATGGCGGAGGAATTAGAAGGAAGAAATCATGGGAAATGGAAATGGAAACAGAAAGAGGAGGCTGTTCAAGAATGAGTGATGATGAAGATAATAATGCCTCTGCTGCTGCTGCCGCTGCTCGTAAAAAGCTTCGACTTTCTAAACAACAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACACCACTCTTAATCCTAAGCAGAAGCTAGCACTAGCGAAGCAGCTAAACCTCCGACCTAGGCAAGTGGAAGTATGGTTTCAGAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAACAGAAGATTACAGAAGGAACTTCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCCTTTTATATGCAACTTCCAGCCACCACACTCACCATGTGCCCCTCATGTGAGCGCGTCGCCACCACCACCACCGCTCCCACCGCCCCCACCCCGTCGTCCGCTCTTTGCCTCGCTAACAAACCGAAGATCTTGCCATTTCCTCATTTGCATCAGGCTGCTTCATGA 1086 47.15 MELGLSLGDHPPSNSNKPFGFLSKPLSSSSSSSLMALGFCVGLIGHHSASASASASASASVQDDDEEEEEEEDDNNDHKTVLPGSASGLDPPVQLDLLPLAPVPRSSSSSLPFPWLSHHLMAEVGSSEGGERVELDVSRVAMAAEETEDRVVAALSSPNSTVSCFQMEFGVRNGGGIRRKKSWEMEMETERGGCSRMSDDEDNNASAAAAAARKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTTTAPTAPTPSSALCLANKPKILPFPHLHQAAS 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28845899 28848506 + Lsi03G017460.1 Lsi03g01746 659496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01746 361 Gene3D - 217 267 - -
Lsi03g01746 361 MobiDBLite consensus disorder prediction 61 75 - -
Lsi03g01746 361 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 62 344 - -
Lsi03g01746 361 Coils Coil 275 305 - -
Lsi03g01746 361 CDD homeodomain 213 270 IPR001356 GO:0003677
Lsi03g01746 361 MobiDBLite consensus disorder prediction 52 93 - -
Lsi03g01746 361 SUPERFAMILY Homeodomain-like 198 270 IPR009057 -
Lsi03g01746 361 MobiDBLite consensus disorder prediction 9 32 - -
Lsi03g01746 361 Pfam Homeodomain 213 267 IPR001356 GO:0003677
Lsi03g01746 361 PANTHER - 62 344 - -
Lsi03g01746 361 CDD bZIP 262 301 - -
Lsi03g01746 361 MobiDBLite consensus disorder prediction 1 32 - -
Lsi03g01746 361 ProSiteProfiles 'Homeobox' domain profile. 209 269 IPR001356 GO:0003677
Lsi03g01746 361 SMART halz 269 312 IPR003106 GO:0006355|GO:0043565
Lsi03g01746 361 SMART HOX_1 211 273 IPR001356 GO:0003677
Lsi03g01746 361 Pfam Homeobox associated leucine zipper 269 303 IPR003106 GO:0006355|GO:0043565
Lsi03g01746 361 ProSitePatterns 'Homeobox' domain signature. 244 267 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01235 Lsi-Chr3:22919024 Lsi03g01746 Lsi-Chr3:28845899 1.87E-06 dispersed
Lsi03g01746 Lsi-Chr3:28845899 Lsi07g01279 Lsi-Chr7:18633125 5.79E-71 dispersed
Lsi05g02181 Lsi-Chr5:28450834 Lsi03g01746 Lsi-Chr3:28845899 1.42E-71 transposed
Lsi02g02612 Lsi-Chr2:32506859 Lsi03g01746 Lsi-Chr3:28845899 1.72E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25045 PF00046 Homeodomain 4.10E-15 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01746 K09338 - csv:101222778 463.766