Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01806 ATGAACACCTCCACGGACTCCGACGGAGGCGACGGTGGCGGCGTCGGCAGTTTCCCCTACGTCGTTGGAATTTCAGTTGGAATCCTCTTCCTCCTCACAACCCTTACAATTGCGACCTATTTCTGCACCAGAACCACCGTTCCGCAGCCGAATCGTCGTTTCCGACCGGCGGAACGGCGGGATTTCGTCGTCGATTTTGGATTGGGACTTGAAGATGAGGTCATTAATGGATATCCGAAGATTCTGTATTCGGAGGCGAAATTGGAGGGAAAATTGGAATCCACCGCCGCGAGCGGTTGTTCGATTTGTTTAGGGGATTATAAAAAGGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTACGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCGGTGCCGACGCCGATTTCCACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA 498 53.41 MNTSTDSDGGDGGGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAERRDFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDCGHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29493392 29493889 - Lsi03G018060.1 Lsi03g01806 659556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01806 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 147 IPR013083 -
Lsi03g01806 165 CDD RING-H2_PA-TM-RING 100 142 - -
Lsi03g01806 165 Pfam Ring finger domain 100 142 IPR001841 -
Lsi03g01806 165 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Lsi03g01806 165 SUPERFAMILY RING/U-box 74 147 - -
Lsi03g01806 165 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 163 IPR045899 -
Lsi03g01806 165 SMART ring_2 100 141 IPR001841 -
Lsi03g01806 165 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 12 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01806 - - - mdm:103454174 188.348
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01806 Lsi-Chr3:29493392 Lsi05g02120 Lsi-Chr5:28058594 1.37E-21 dispersed
Lsi05g02075 Lsi-Chr5:27642737 Lsi03g01806 Lsi-Chr3:29493392 5.29E-34 transposed
Lsi08g00658 Lsi-Chr8:14925127 Lsi03g01806 Lsi-Chr3:29493392 8.01E-21 transposed
Lsi08g00926 Lsi-Chr8:17650994 Lsi03g01806 Lsi-Chr3:29493392 5.41E-38 transposed
Lsi01g01180 Lsi-Chr1:10032251 Lsi03g01806 Lsi-Chr3:29493392 1.08E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00931 . 82 598 C3H Transcription Factor Family AT2G31510 72.6 2.1e-225 778.5
Lsi08g00360 . 86 512 C3H Transcription Factor Family AT2G31510 79.9 7.3e-215 743.4
Lsi11g00931 . 51 572 C3H Transcription Factor Family AT2G31770 53.1 9.4e-163 570.5
Lsi08g00360 . 17 505 C3H Transcription Factor Family AT2G31770 53.8 2.1e-154 542.7
Lsi11g00931 . 65 557 C3H Transcription Factor Family AT2G31760 54.7 1.2e-162 570.1
Lsi08g00360 . 74 512 C3H Transcription Factor Family AT2G31760 57.8 7.6e-154 540.8
Lsi01g01180 . 8 170 C3H Transcription Factor Family AT5G06490 53.6 6.9e-47 184.1
Lsi01g01180 . 8 170 C3H Transcription Factor Family AT5G06490 53.6 6.9e-47 184.1
Lsi03g00188 . 81 300 C3H Transcription Factor Family AT3G02290 62.7 1.3e-73 273.1
Lsi06g00932 . 2 324 C3H Transcription Factor Family AT1G11020 70.4 6.2e-130 460.7
Lsi07g00675 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.8e-68 255.0
Lsi01g01995 . 2 324 C3H Transcription Factor Family AT5G08750 59.2 7.6e-100 360.9
Lsi03g00937 . 1 482 C3H Transcription Factor Family AT3G16090 63.4 2.8e-161 565.5
Lsi03g00188 . 77 300 C3H Transcription Factor Family AT5G38895 56.0 3.4e-70 262.3
Lsi08g01421 . 16 227 C3H Transcription Factor Family AT1G19310 67.0 1.8e-78 289.3
Lsi01g01051 . 16 225 C3H Transcription Factor Family AT1G19310 61.2 1.3e-70 263.1
Lsi01g00729 . 9 315 C3H Transcription Factor Family AT2G22120 66.8 3.4e-116 415.2
Lsi08g00926 . 33 165 C3H Transcription Factor Family AT5G07040 61.8 9.9e-44 173.3
Lsi06g01347 . 1 403 C3H Transcription Factor Family AT1G18470 71.2 4.8e-170 594.3
Lsi11g00931 . 51 572 C3H Transcription Factor Family AT2G31770 53.1 9.4e-163 570.5
Lsi08g00360 . 17 505 C3H Transcription Factor Family AT2G31770 53.8 2.1e-154 542.7
Lsi11g00931 . 65 557 C3H Transcription Factor Family AT2G31760 54.7 1.2e-162 570.1
Lsi08g00360 . 74 512 C3H Transcription Factor Family AT2G31760 57.8 7.6e-154 540.8
Lsi02g01811 . 43 278 C3H Transcription Factor Family AT5G55970 67.4 1.7e-95 346.3
Lsi01g01995 . 2 324 C3H Transcription Factor Family AT5G63780 55.6 1.4e-96 350.1
Lsi03g01745 . 1 427 C3H Transcription Factor Family AT3G58030 51.9 6.8e-103 371.3
Lsi02g01811 . 36 345 C3H Transcription Factor Family AT4G26580 61.5 2.1e-112 402.5
Lsi01g01637 . 11 446 C3H Transcription Factor Family AT5G01960 66.4 1.4e-148 523.1
Lsi11g01333 . 69 210 C3H Transcription Factor Family AT2G04240 56.5 5.4e-37 151.0
Lsi10g01089 . 1 242 C3H Transcription Factor Family AT5G19430 51.8 1.3e-61 233.4
Lsi07g00769 . 130 585 C3H Transcription Factor Family AT5G45290 52.3 4.2e-102 369.0
Lsi10g01089 . 40 242 C3H Transcription Factor Family AT5G12310 56.4 1.5e-57 219.9
Lsi06g01233 CCT 138 430 C3H Transcription Factor Family AT5G05810 54.1 5.6e-75 278.5
Lsi03g00338 . 53 219 C3H Transcription Factor Family AT5G05830 64.7 3.7e-59 224.9
Lsi03g02162 CCT,ECH 70 231 C3H Transcription Factor Family AT5G05830 61.7 4.2e-55 211.5
Lsi01g01511 CCT,ECH 36 166 C3H Transcription Factor Family AT5G05830 58.8 6.5e-40 161.0
Lsi06g00828 CCT 70 457 C3H Transcription Factor Family AT4G28890 51.6 1.6e-96 350.1
Lsi03g00188 . 81 300 C3H Transcription Factor Family AT5G15790 59.7 7.3e-72 267.3
Lsi03g00367 . 40 311 C3H Transcription Factor Family AT3G55530 79.9 6.3e-115 410.6
Lsi02g02317 . 1 273 C3H Transcription Factor Family AT1G63900 76.3 3.1e-117 418.3
Lsi05g01907 . 10 393 C3H Transcription Factor Family AT2G44580 53.3 1.0e-118 423.7
Lsi08g01421 . 25 150 C3H Transcription Factor Family AT1G74990 59.1 5.7e-40 160.6
Lsi04g01367 . 404 677 C3H Transcription Factor Family AT5G20910 63.9 1.7e-95 346.3
Lsi03g00937 . 119 475 C3H Transcription Factor Family AT1G65040 57.4 3.5e-101 365.2
Lsi01g01051 . 17 227 C3H Transcription Factor Family AT2G23780 61.6 2.2e-73 272.3
Lsi08g01421 . 6 229 C3H Transcription Factor Family AT2G23780 56.5 8.2e-68 253.8
Lsi03g01619 CCT 1 317 C3H Transcription Factor Family AT3G10810 53.9 1.6e-79 293.9
Lsi01g01756 CCT 46 283 C3H Transcription Factor Family AT3G10810 60.7 1.0e-67 254.6
Lsi09g00235 . 1 170 C3H Transcription Factor Family AT1G63840 59.0 5.8e-47 184.1
Lsi09g01587 . 1 152 C3H Transcription Factor Family AT1G63840 50.9 4.1e-40 161.4
Lsi09g00690 . 17 353 C3H Transcription Factor Family AT1G68070 65.1 1.1e-119 426.8
Lsi07g01384 . 47 376 C3H Transcription Factor Family AT1G68070 50.5 1.7e-85 313.2
Lsi04g01830 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.2e-50 195.7
Lsi07g01038 . 54 212 C3H Transcription Factor Family AT1G76410 55.7 8.0e-45 177.2
Lsi07g01038 . 54 203 C3H Transcription Factor Family AT2G17450 56.9 1.1e-38 156.8
Lsi11g00931 . 82 598 C3H Transcription Factor Family AT2G31510 72.6 2.1e-225 778.5
Lsi08g00360 . 86 512 C3H Transcription Factor Family AT2G31510 79.9 7.3e-215 743.4
Lsi01g01180 . 7 169 C3H Transcription Factor Family AT2G35910 61.2 5.5e-53 204.5
Lsi03g01806 . 15 161 C3H Transcription Factor Family AT2G35910 54.2 4.3e-42 168.3
Lsi05g00102 . 61 318 C3H Transcription Factor Family AT2G41980 81.0 8.6e-129 456.8
Lsi05g00103 . 564 821 C3H Transcription Factor Family AT2G41980 80.2 3.3e-128 454.9
Lsi10g00990 . 27 323 C3H Transcription Factor Family AT2G41980 71.9 2.1e-127 452.2
Lsi09g01813 . 43 301 C3H Transcription Factor Family AT2G41980 75.7 1.8e-123 439.1
Lsi09g00815 . 959 1240 C3H Transcription Factor Family AT2G41980 69.9 3.2e-115 411.8
Lsi04g00034 . 106 343 C3H Transcription Factor Family AT2G41980 78.6 9.2e-115 410.2
Lsi01g01940 . 50 236 C3H Transcription Factor Family AT2G41980 85.0 2.4e-94 342.4
Lsi05g01456 . 123 397 C3H Transcription Factor Family AT3G06140 62.7 7.3e-95 344.4
Lsi03g02030 . 33 329 C3H Transcription Factor Family AT3G09770 59.4 1.2e-86 317.0
Lsi05g00445 . 123 613 C3H Transcription Factor Family AT3G26730 52.9 3.5e-144 509.2
Lsi02g00365 . 342 633 C3H Transcription Factor Family AT3G47990 70.2 6.5e-121 430.6
Lsi04g01830 . 4 183 C3H Transcription Factor Family AT1G20823 55.6 3.9e-50 194.9
Lsi07g01038 . 54 235 C3H Transcription Factor Family AT1G20823 51.3 1.5e-46 183.0
Lsi10g00332 . 4 395 C3H Transcription Factor Family AT3G18930 53.8 3.2e-86 315.8
Lsi07g01081 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 4.0e-75 278.1
Lsi03g02071 . 41 310 C3H Transcription Factor Family AT5G02750 53.4 3.0e-67 252.3
Lsi06g01347 . 5 406 C3H Transcription Factor Family AT1G73950 64.4 6.5e-146 514.2
Lsi09g00690 . 15 251 C3H Transcription Factor Family AT2G01735 60.4 1.3e-74 276.6
Lsi07g01384 . 60 269 C3H Transcription Factor Family AT2G01735 52.8 2.7e-51 199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014258 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 0 23