Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g01806 | ATGAACACCTCCACGGACTCCGACGGAGGCGACGGTGGCGGCGTCGGCAGTTTCCCCTACGTCGTTGGAATTTCAGTTGGAATCCTCTTCCTCCTCACAACCCTTACAATTGCGACCTATTTCTGCACCAGAACCACCGTTCCGCAGCCGAATCGTCGTTTCCGACCGGCGGAACGGCGGGATTTCGTCGTCGATTTTGGATTGGGACTTGAAGATGAGGTCATTAATGGATATCCGAAGATTCTGTATTCGGAGGCGAAATTGGAGGGAAAATTGGAATCCACCGCCGCGAGCGGTTGTTCGATTTGTTTAGGGGATTATAAAAAGGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTACGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCGGTGCCGACGCCGATTTCCACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA | 498 | 53.41 | MNTSTDSDGGDGGGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAERRDFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDCGHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 29493392 | 29493889 | - | Lsi03G018060.1 | Lsi03g01806 | 659556 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g01806 | 165 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 147 | IPR013083 | - | |
| Lsi03g01806 | 165 | CDD | RING-H2_PA-TM-RING | 100 | 142 | - | - | |
| Lsi03g01806 | 165 | Pfam | Ring finger domain | 100 | 142 | IPR001841 | - | |
| Lsi03g01806 | 165 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 142 | IPR001841 | - | |
| Lsi03g01806 | 165 | SUPERFAMILY | RING/U-box | 74 | 147 | - | - | |
| Lsi03g01806 | 165 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 12 | 163 | IPR045899 | - | |
| Lsi03g01806 | 165 | SMART | ring_2 | 100 | 141 | IPR001841 | - | |
| Lsi03g01806 | 165 | PANTHER | RING-H2 FINGER PROTEIN ATL71-RELATED | 12 | 163 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g01806 | Lsi-Chr3:29493392 | Lsi05g02120 | Lsi-Chr5:28058594 | 1.37E-21 | dispersed | |
| Lsi05g02075 | Lsi-Chr5:27642737 | Lsi03g01806 | Lsi-Chr3:29493392 | 5.29E-34 | transposed | |
| Lsi08g00658 | Lsi-Chr8:14925127 | Lsi03g01806 | Lsi-Chr3:29493392 | 8.01E-21 | transposed | |
| Lsi08g00926 | Lsi-Chr8:17650994 | Lsi03g01806 | Lsi-Chr3:29493392 | 5.41E-38 | transposed | |
| Lsi01g01180 | Lsi-Chr1:10032251 | Lsi03g01806 | Lsi-Chr3:29493392 | 1.08E-56 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g01806 | - | - | mdm:103454174 | 188.348 |