Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01810 ATGAACGATTTATTCTCCTCTCGATCCTTTTCCCGCGACACCCATGTTGTTGAAATGGGCAACGCTTCCTCTTCCCCCACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAGTCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACACTAACCTCCATGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCTGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCCCTTGCTCTTAAGAAGGCCAAGCTCATTAAAGTCCGATTGGAGGCTCTTGATCGCTCTAATGCTGCCAATCGGAGCCTCCCTGGTTGCGGTCCCGGTTCCTCTTCTGACCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGATTCTATGGAGAGTTTCAACAATCTCAGGCAACAGATCTCCTCCGAGTACAGGGAGACCGTTCAGCGAAGATATTACACGGTTACTGGTGAAAATCCGGACGAGAAGACCATTGATGTCTTGATATCTACAGGTGAAAGTGAAACATTCTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATCTTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAACTCGACGACATCGAGAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGCCTGCAGCCTTGGAAGAAAAATAACAGTGGTTCATCCACAACACCCTAAAACGCCTGGTTTAAGGCCTCTTTCCTACGAAGTTCAACGAGTCGTCTCATACCTAAAAACTCTCGATCGAGCCCTCACACCATACCGCTATTCGAGTTCATCTCTCTTACCAATTCGAACCAATTTCAAGCAAGTTCAAATCAAAGCGCATCTTTCAAGCTCTTCTCTCGCTTTCCTCGACCATGGGAACACTGCGAATGATAGGGCAGACGAAAGGGTCTCTGTCCTTTTACTTCTCTGGAATGAGATTAGTGTTTTGAATGCAGATGGTATGTTCAAAGGAATTTACCACGGGAAGCAATACCACGCAGCTGACATTGCAGCTGTATTGAGCAGGGCTTGGAGTGCTGGGGTTCAGCGAATCATTGAATTTGAAGAGAGTGGTGACCCAGAGACGTATTTTCAGGCTCTTCTTTCATTGACCAAAGAGGGAATTGAGAAAGGAAAGGTCGTTGCAGTTGGTGAATGTGGATTAGATTATGACAGGCTTCACTTTTGCCCTGCTGATATTCAAAAGAAATATTTCGAGAAGCAGTTTGAATTAGCACACACAACAAAGCTTCCTATGTTTCTACACATGCGTGCAGCTGCTGAAGATTTTTGTGACATTGTAGAGCGAAATAAGCAAAGGTTTTGTGCTGGAGTTGTTCATTCTTTTACAGATAGTGCAGAAGATCGTGACAAGCTTCTCTCATTCAGTAACTTATACATAGGGATTAACGGTTGCTCTCTGAAAACTGCTGAAAATCTTGATGTTGTGAGGGGTATACCAATTGAGAGACTGATGATTGAGACAGACTCTCCATATTGTGAAATCAAGAACACACATGCTGGGATTAAGTTTGTTAAATCGGTCTGGGCTTCTAAGAAGAAAGAGAAACATGATGAGCAGTGCATAGTGAAAGGCCGGAATGAACCATGTTTAGTTCGGCAAGTTCTTGAGGTCTTGGCTGGATGTAAAGGCATCATGGATATCGATCAGCTTAGTGAAACTTTGTACCACAATACGTGCAGAGTTTTCTTTCCTCAAGACCTGGACTCTGCAGCAGATGCTCTCCTTGCTGGTTCTCACGATCTTGATGAAAAAAAATTAGTATAA 1911 44.74 MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLYTNLHDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRACSLGRKITVVHPQHPKTPGLRPLSYEVQRVVSYLKTLDRALTPYRYSSSSLLPIRTNFKQVQIKAHLSSSSLAFLDHGNTANDRADERVSVLLLLWNEISVLNADGMFKGIYHGKQYHAADIAAVLSRAWSAGVQRIIEFEESGDPETYFQALLSLTKEGIEKGKVVAVGECGLDYDRLHFCPADIQKKYFEKQFELAHTTKLPMFLHMRAAAEDFCDIVERNKQRFCAGVVHSFTDSAEDRDKLLSFSNLYIGINGCSLKTAENLDVVRGIPIERLMIETDSPYCEIKNTHAGIKFVKSVWASKKKEKHDEQCIVKGRNEPCLVRQVLEVLAGCKGIMDIDQLSETLYHNTCRVFFPQDLDSAADALLAGSHDLDEKKLV 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29539565 29551016 - Lsi03G018110.1 Lsi03g01810 659560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01810 636 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 392 624 - -
Lsi03g01810 636 PANTHER DEOXYRIBONUCLEASE TATDN1-RELATED 353 393 - -
Lsi03g01810 636 PANTHER DEOXYRIBONUCLEASE TATDN1-RELATED 392 624 - -
Lsi03g01810 636 SUPERFAMILY Metallo-dependent hydrolases 374 612 IPR032466 -
Lsi03g01810 636 SMART SynN_4 26 152 IPR006011 GO:0016020
Lsi03g01810 636 SMART tSNARE_6 196 265 IPR000727 -
Lsi03g01810 636 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lsi03g01810 636 Coils Coil 31 58 - -
Lsi03g01810 636 CDD SNARE_syntaxin1-like 200 253 - -
Lsi03g01810 636 CDD TatD_DNAse 374 612 IPR001130 GO:0016788
Lsi03g01810 636 Coils Coil 204 224 - -
Lsi03g01810 636 Coils Coil 126 150 - -
Lsi03g01810 636 SUPERFAMILY t-snare proteins 30 254 IPR010989 GO:0016020|GO:0016192
Lsi03g01810 636 ProSitePatterns TatD deoxyribonuclease family signature 2. 459 469 IPR018228 -
Lsi03g01810 636 Pfam TatD related DNase 403 611 IPR001130 GO:0016788
Lsi03g01810 636 Gene3D - 351 618 - -
Lsi03g01810 636 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 353 393 - -
Lsi03g01810 636 Gene3D - 29 253 - -
Lsi03g01810 636 ProSitePatterns TatD deoxyribonuclease family signature 3. 523 539 IPR018228 -
Lsi03g01810 636 CDD SynN 31 188 IPR006011 GO:0016020
Lsi03g01810 636 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Lsi03g01810 636 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 254 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00706 Lsi-Chr2:6322594 Lsi03g01810 Lsi-Chr3:29539565 2.03E-108 dispersed
Lsi03g01810 Lsi-Chr3:29539565 Lsi10g00145 Lsi-Chr10:2351402 2.13E-47 dispersed
Lsi01g01181 Lsi-Chr1:10035743 Lsi03g01810 Lsi-Chr3:29539565 1.39E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01810 K03424 - csv:101209174 533.487