Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g01816 | ATGGAAGACGAAATCGAAGTCCCCCACTACTTTCTCTGCCCCATCTCCCTTCAAATCATGAAAGACCCTGTAACTCTTCCTTCCGGCATAACCTACGACCGCCACTCCATTGAAACTTGGCTCTTCTCCAACAAAAACTCCTTCTGCCCCGTCACCAAACTCCCCATCTCCGACTCCGATTCCGATTTCCTCACCCCAAACCACACCCTCCGCCGTCTAATCCAAGCTTGGTGTACTTTGAACTCCTCCCATGGCGTCGAACGTTTCCCCACTCCCAAACCCCCCATCCATAAATCCCAAATCCTTCACCTCATTTCCTCTGCTAACACTTCCCCTTCTTCTTTAATCTCCTCCATCCGCCGTCTCCGCTCCATCTCTGCCGACTCTGAAACTAATCGACGCTGTGTTGAATCTGCCGGAGCGCCTGAGTTTTTAGCCTCTGTTATTGTCGACACCGACTCCACTGCCTCTCATGAAGCTCTCTCCACTCTCCATTACCTCCGTCTCTCCGATTCAACGTTGAAATCCTTGGCTACCCACTCCGAGTTTCTCGATTCTTTGACGAATTTCATGAAATTACAGGGTACCCATGAATCGTCGAGAGCGTATGCGGTGTTAATCTGGAAATCTATTGTAGAAGTCGCTGACCCAATTCAACTAAGCTTCTTGAAATCCGATTTGTTTGTGCAAATTGTTGAGATTTTGAAGGATCGGTCATCGTCTCAGCAGATTTTCAAGGCGGCATTGGGGATTTTGATTGCGGCCTGTCCATGGGGGAGGAACAGAGTGAAGACGGTGGAGGCAGGTGGGGTTGGGGCTTTGGTTGAGATTTTACTGGCGACGCCGGAAAGGAGAGTTTGTGAGATGACGTTGACGGCGATGGATTTACTCTGTGGGTGTGCGGATGGCAGGGCGGCGCTGCTGGCACACGGCGGAGGGATAGCGGTGGTTTCGAAGAAGATACTGAGAGTGTCGCAAGTGGGGAGTGAAAGGGCGGTGAGGATTCTGTATTGGGTGGCGAAATTCTCGGGAAGTCCGGCGGTTTTGATGGAAATGGCGCAATTAGGGATTGTAGCGAAGCTGTGTTTGGTTCTGCAAATTGAAAGTGGAAGCAAGACGAAGGAGAAAGCTAGAGAGATTCTGAAAATGCATGCTCGTGTTTGGAAGAATTCGCCTTGTATTCCTTCTAAATTGGCTTCTTCATATCCTTCAAATTAA | 1218 | 49.67 | MEDEIEVPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSNKNSFCPVTKLPISDSDSDFLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHLISSANTSPSSLISSIRRLRSISADSETNRRCVESAGAPEFLASVIVDTDSTASHEALSTLHYLRLSDSTLKSLATHSEFLDSLTNFMKLQGTHESSRAYAVLIWKSIVEVADPIQLSFLKSDLFVQIVEILKDRSSSQQIFKAALGILIAACPWGRNRVKTVEAGGVGALVEILLATPERRVCEMTLTAMDLLCGCADGRAALLAHGGGIAVVSKKILRVSQVGSERAVRILYWVAKFSGSPAVLMEMAQLGIVAKLCLVLQIESGSKTKEKAREILKMHARVWKNSPCIPSKLASSYPSN | 405 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 29647859 | 29649076 | - | Lsi03G018160.1 | Lsi03g01816 | 659566 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g01816 | 405 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 88 | IPR013083 | - | |
| Lsi03g01816 | 405 | SMART | Ubox_2 | 10 | 77 | IPR003613 | GO:0004842|GO:0016567 | |
| Lsi03g01816 | 405 | Pfam | U-box domain | 7 | 81 | IPR003613 | GO:0004842|GO:0016567 | |
| Lsi03g01816 | 405 | ProSiteProfiles | U-box domain profile. | 6 | 84 | IPR003613 | GO:0004842|GO:0016567 | |
| Lsi03g01816 | 405 | SUPERFAMILY | RING/U-box | 4 | 85 | - | - | |
| Lsi03g01816 | 405 | Gene3D | - | 95 | 392 | IPR011989 | - | |
| Lsi03g01816 | 405 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PUB23 | 3 | 404 | - | - | |
| Lsi03g01816 | 405 | SUPERFAMILY | ARM repeat | 101 | 371 | IPR016024 | - | |
| Lsi03g01816 | 405 | PANTHER | WDSAM1 PROTEIN | 3 | 404 | IPR045185 | GO:0061630 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g01816 | Lsi-Chr3:29647859 | Lsi06g00616 | Lsi-Chr6:8639774 | 1.20E-89 | dispersed | |
| Lsi01g01651 | Lsi-Chr1:15058215 | Lsi03g01816 | Lsi-Chr3:29647859 | 1.79E-57 | transposed | |
| Lsi04g00991 | Lsi-Chr4:10800605 | Lsi03g01816 | Lsi-Chr3:29647859 | 7.20E-57 | transposed | |
| Lsi05g00219 | Lsi-Chr5:2970010 | Lsi03g01816 | Lsi-Chr3:29647859 | 1.26E-58 | transposed | |
| Lsi05g00339 | Lsi-Chr5:4302023 | Lsi03g01816 | Lsi-Chr3:29647859 | 3.02E-51 | transposed | |
| Lsi05g01139 | Lsi-Chr5:19146629 | Lsi03g01816 | Lsi-Chr3:29647859 | 1.77E-08 | transposed | |
| Lsi10g01136 | Lsi-Chr10:15647612 | Lsi03g01816 | Lsi-Chr3:29647859 | 1.91E-137 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g01816 | - | - | csv:101208445 | 682.559 |