Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01817 ATGGCGACTTACCTTCATGGCAATTCTGATCAATTCCAATCTTCTGATGGTGGCCTTCAAACCCTTGTCTTAATGAATCCAAGCTATGTTCAATTTTCTGACACTCCGCCGCCTCCGCCTCCGTCACACCCTAATCTTGTCTTCTTCAATTCTCCTTCTTCGACTGCTAATACCTTCTCTACACTGACACAAGCACACCCGTCGTCTCATACTCAACAATTCGTTGGAATTCCGTTGCAGACGACGGCCACTTCCCCCACATCCCAAGACCATAATTCGCATCCTTTGAATCCCCACCATGATATCTCTCCCTTACATGGCTTTGTTCCGCGCCTTCAGCATAACATTTGGAACCAAATTGACCCATCCACGGCGGCGCGTGAGTCTGCACGTGCTCAGCAGGGGTTGTCTTTGAGTCTCTCTTCACAACACCAACAAGGTTTTGGGTCGAGAGATGTTCAATCGCAGACACAACAGGCGGCTTCTGGCGAGGAGAACATGCGGATCTCCGGCGGATCGAGTTCTTCGGCTTCCGGTGTCACTAACGGCGTGGCTGGAATTCAGGGCGTTTTAATTAGTTCCAAATATCTCAAGGCTGCGCAAGAACTTCTAGATGAGGTTGTTAATGTCACCCAAAACGGAATTAAAAGTGAATCATCTCCGAAGAAGGCCACCGGAAATCAATCGAAGATGATGGGAGATGCATCCGCTACCACCGGAACTGCAGACGGTTCTTTAGAAGGAGAAGCCGATGTTAAACGCGCTGCGGAGCTTACAACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTTATAAGTATGCTTGACGAGGTGGAGCAGAGGTACAGACAGTACCACCACCAGATGCAGATAGTAATATCCTCATTCGAGCAGGCGGCCGGAGCTGGGTCGGCGAGAACCTACACCGCCCTTGCACTTCAGACGATCTCGAAGCAATTCCGCTGCTTAAAAGACGCAATCACCGGCCAAATCCGAGCGGCGAACAAGAGTTTGGGTGAAGAAGAATGTATCGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATAACCATCTCCGGCAACAACGAGCTCTGCAACAATTGGGCATGATCCAACACAATGCTTGGAGACCTCAGAGAGGCTTACCGGAGAGATCGGTTTCAATTCTTCGCGCTTGGCTTTTCGAACACTTCCTCCATCCTTACCCCAAGGATTCAGACAAACACATGCTCGCTAAGCAAACAGGGCTCACCAGAAGCCAGGTTTCGAATTGGTTCATAAACGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAAGAGATGTACATGGAGGAAATCAAAGAGCAACAGCAGAACGGCAGCGGATCGACACCGGCGACGGAAAAAAGCAACGACGATTCAGTTTCGAAATCCATAGCTCCACCACCGGAGACAAAAAGCCCCAATTCAAAACAAGAAAACTCTCCAAACCAAAACGTCCATCCTTCAATCTCAATCTCAAATTCCTCCGGCGGAAATGTTCGAAACCCATCTGGATTTACACTCATCGGAACCTCAGCGGAGCTGGACGGAATCACACAAGGAAGCCCCAAAAAACAGAGAGGCCCAGAAATCCTTCATTCCTCAAACAACAACGTCCCTTTCATAAACATGGACATCAAACCCCGAGAAGAAGAAGAGCATCAAAATCACAATCACAATCCCCATCATAATCATCATCTTCCAATGAAATACGACGACGAGAGACAAAACAGAGATGGATATTCATTTCTAGGCCAACCCCATTTCAACATCGGCGGATTCGGCCAATACCCAATTGGCGAAATCGCCAGATTCGACGCCGATCAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTCTCTTTGACTCTAGGCCTTCCCCATTGCGAAAATCTCTCCTTAAACGCAGCTACCCACCAAAGCTTCCTCCCAAACCAGAGCATCCATTTAGGAAGAAGAACAGAAATTGGAAAACCCACTGATTTTTCCGCCATTAACGCTTCTACAGCTCACTCTTCCACTGCTTTTGAGACCATCAACATCCAAAATGGAAAAAGGTTCGCTGCTCAATTATTGCCAGACTTCGTGGCCTAA 2124 48.26 MATYLHGNSDQFQSSDGGLQTLVLMNPSYVQFSDTPPPPPPSHPNLVFFNSPSSTANTFSTLTQAHPSSHTQQFVGIPLQTTATSPTSQDHNSHPLNPHHDISPLHGFVPRLQHNIWNQIDPSTAARESARAQQGLSLSLSSQHQQGFGSRDVQSQTQQAASGEENMRISGGSSSSASGVTNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNGIKSESSPKKATGNQSKMMGDASATTGTADGSLEGEADVKRAAELTTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEECIGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQQQNGSGSTPATEKSNDDSVSKSIAPPPETKSPNSKQENSPNQNVHPSISISNSSGGNVRNPSGFTLIGTSAELDGITQGSPKKQRGPEILHSSNNNVPFINMDIKPREEEEHQNHNHNPHHNHHLPMKYDDERQNRDGYSFLGQPHFNIGGFGQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNAATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFETINIQNGKRFAAQLLPDFVA 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29661765 29664421 - Lsi03G018170.1 Lsi03g01817 659567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01817 707 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 10 660 - -
Lsi03g01817 707 Pfam Homeobox KN domain 396 435 IPR008422 GO:0003677|GO:0006355
Lsi03g01817 707 Coils Coil 263 283 - -
Lsi03g01817 707 MobiDBLite consensus disorder prediction 82 105 - -
Lsi03g01817 707 MobiDBLite consensus disorder prediction 213 243 - -
Lsi03g01817 707 Gene3D - 382 459 - -
Lsi03g01817 707 SUPERFAMILY Homeodomain-like 380 446 IPR009057 -
Lsi03g01817 707 MobiDBLite consensus disorder prediction 213 245 - -
Lsi03g01817 707 MobiDBLite consensus disorder prediction 450 529 - -
Lsi03g01817 707 Pfam Associated with HOX 190 330 IPR006563 -
Lsi03g01817 707 CDD homeodomain 379 440 IPR001356 GO:0003677
Lsi03g01817 707 MobiDBLite consensus disorder prediction 123 179 - -
Lsi03g01817 707 ProSiteProfiles 'Homeobox' domain profile. 376 439 IPR001356 GO:0003677
Lsi03g01817 707 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 660 - -
Lsi03g01817 707 MobiDBLite consensus disorder prediction 449 550 - -
Lsi03g01817 707 SMART HOX_1 379 443 IPR001356 GO:0003677
Lsi03g01817 707 SMART prehox3 185 331 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00020 Lsi-Chr3:394554 Lsi03g01817 Lsi-Chr3:29661765 6.76E-66 dispersed
Lsi03g01817 Lsi-Chr3:29661765 Lsi03g02150 Lsi-Chr3:32633290 9.62E-63 dispersed
Lsi01g01043 Lsi-Chr1:8628619 Lsi03g01817 Lsi-Chr3:29661765 6.74E-65 transposed
Lsi02g02721 Lsi-Chr2:33526591 Lsi03g01817 Lsi-Chr3:29661765 5.81E-76 transposed
Lsi08g01577 Lsi-Chr8:23793283 Lsi03g01817 Lsi-Chr3:29661765 4.49E-50 transposed
Lsi10g00402 Lsi-Chr10:6095589 Lsi03g01817 Lsi-Chr3:29661765 3.79E-86 transposed
Lsi10g00586 Lsi-Chr10:8505997 Lsi03g01817 Lsi-Chr3:29661765 1.18E-48 transposed
Lsi10g01137 Lsi-Chr10:15662058 Lsi03g01817 Lsi-Chr3:29661765 4.71E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25052 PF07526 POX 4.40E-50 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01817 - - csv:101208201 1289.25