Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01863 | ATGTCCATAAACCACTTCTCTCCTGACTTCCATCGACCACTCTTCTCTACTCCCCAACTCCCCATCATGCTTAACCCCAAATCCTCTCTCTCCGTCGCCGCCGCCACCGCCACCGCCGACCACCTCCCCATGTTCGAAAAACCCTTAACCCCAAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAGTACTTCCCCCTTTCCCCCTCCGCCGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTATTCTTATTGGAATAGTAGTCAGAGCTATGTGCTGACAAAAGGGTGGAGCCGCTTTGTCAAAGAGAAGCGCCTTGACGCCGGTGATGTTGTCGTTTTTGAACGCCACCGCCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCTGTGGCTGCCGCGAGTGGCGGTGTGGGCGGCAGTGGAGGTTGGACTAGAATGTTCTGTTCTACGAATCCATATCCTTCTTCTCATCATCATCATCATCTTCCTTCACCGCCATACCAATCTTCTTCTGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGCTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACGCTCAGTGTCGGGTCAAGTTTAAGTTTATCGGGTCGAGATCCAACCTGCCACAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGCTTCAAGGTTTTGTGTTGTATTTAGTATCAATCTTAGCCACCAATTTTCAATCTTAACACTAAACTTGATGAACAAAACTTAA | 915 | 51.69 | MSINHFSPDFHRPLFSTPQLPIMLNPKSSLSVAAATATADHLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADTAVAAASGGVGGSGGWTRMFCSTNPYPSSHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTCHSFYTHYSSPLPHHMASRFCVVFSINLSHQFSILTLNLMNKT | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30075045 | 30077144 | + | Lsi03G018630.1 | Lsi03g01863 | 659613 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01863 | 304 | CDD | B3_DNA | 43 | 142 | IPR003340 | GO:0003677 | |
Lsi03g01863 | 304 | Gene3D | - | 34 | 161 | IPR015300 | - | |
Lsi03g01863 | 304 | SUPERFAMILY | DNA-binding pseudobarrel domain | 41 | 153 | IPR015300 | - | |
Lsi03g01863 | 304 | SMART | B3_2 | 45 | 153 | IPR003340 | GO:0003677 | |
Lsi03g01863 | 304 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 | 38 | 244 | - | - | |
Lsi03g01863 | 304 | Pfam | B3 DNA binding domain | 45 | 152 | IPR003340 | GO:0003677 | |
Lsi03g01863 | 304 | MobiDBLite | consensus disorder prediction | 187 | 217 | - | - | |
Lsi03g01863 | 304 | ProSiteProfiles | B3 DNA-binding domain profile. | 45 | 153 | IPR003340 | GO:0003677 | |
Lsi03g01863 | 304 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 38 | 244 | IPR044800 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01863 | Lsi-Chr3:30075045 | Lsi09g01706 | Lsi-Chr9:25589090 | 1.06E-48 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25055 | PF02362 | B3 | 5.40E-31 | CL0405 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01863 | - | - | bhj:120091802 | 457.988 |