Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01863 ATGTCCATAAACCACTTCTCTCCTGACTTCCATCGACCACTCTTCTCTACTCCCCAACTCCCCATCATGCTTAACCCCAAATCCTCTCTCTCCGTCGCCGCCGCCACCGCCACCGCCGACCACCTCCCCATGTTCGAAAAACCCTTAACCCCAAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAGTACTTCCCCCTTTCCCCCTCCGCCGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTATTCTTATTGGAATAGTAGTCAGAGCTATGTGCTGACAAAAGGGTGGAGCCGCTTTGTCAAAGAGAAGCGCCTTGACGCCGGTGATGTTGTCGTTTTTGAACGCCACCGCCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCTGTGGCTGCCGCGAGTGGCGGTGTGGGCGGCAGTGGAGGTTGGACTAGAATGTTCTGTTCTACGAATCCATATCCTTCTTCTCATCATCATCATCATCTTCCTTCACCGCCATACCAATCTTCTTCTGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGCTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACGCTCAGTGTCGGGTCAAGTTTAAGTTTATCGGGTCGAGATCCAACCTGCCACAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGCTTCAAGGTTTTGTGTTGTATTTAGTATCAATCTTAGCCACCAATTTTCAATCTTAACACTAAACTTGATGAACAAAACTTAA 915 51.69 MSINHFSPDFHRPLFSTPQLPIMLNPKSSLSVAAATATADHLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADTAVAAASGGVGGSGGWTRMFCSTNPYPSSHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTCHSFYTHYSSPLPHHMASRFCVVFSINLSHQFSILTLNLMNKT 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30075045 30077144 + Lsi03G018630.1 Lsi03g01863 659613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01863 304 CDD B3_DNA 43 142 IPR003340 GO:0003677
Lsi03g01863 304 Gene3D - 34 161 IPR015300 -
Lsi03g01863 304 SUPERFAMILY DNA-binding pseudobarrel domain 41 153 IPR015300 -
Lsi03g01863 304 SMART B3_2 45 153 IPR003340 GO:0003677
Lsi03g01863 304 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 38 244 - -
Lsi03g01863 304 Pfam B3 DNA binding domain 45 152 IPR003340 GO:0003677
Lsi03g01863 304 MobiDBLite consensus disorder prediction 187 217 - -
Lsi03g01863 304 ProSiteProfiles B3 DNA-binding domain profile. 45 153 IPR003340 GO:0003677
Lsi03g01863 304 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 244 IPR044800 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01863 Lsi-Chr3:30075045 Lsi09g01706 Lsi-Chr9:25589090 1.06E-48 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25055 PF02362 B3 5.40E-31 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01863 - - bhj:120091802 457.988