Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01872 ATGTGGGCAAGCGCCGAAGGAGGACCGCCGGAGGTAACTCTGGAGACTTCCATGGGTTCTTTCACCGTCGAGCTTTACTTCAAACACGCACCGAGGACATGTAGAAACTTCATTGAGCTTTCTCGGCGAGGTTATTATGACAATGTCAAATTTCACCGGATTATTAAGGATTTTATAGTGCAAGGTGGAGATCCCACAGGAACTGGACGTGGTGGGGAATCTATTTATGGCAAGAAGTTTGAGGATGAAATAAAACCAGAATTGAAGCACACTGGAGCTGGTATTCTATCAATGGCAAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATCACTCTTGCTCCTTGCCCATCCTTAGATGGAAAGCACTCCATCTTTGGAAGAGTTTGTAGGGGAATGGAAATAATCAAAAGGCTTGGCAGTGTACAAACCGATAACAATGATAGACCCATCCATGATGTGAAAATATTACGGGCATCAGTTAAAGACTAA 495 43.64 MWASAEGGPPEVTLETSMGSFTVELYFKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRASVKD 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30129789 30134175 + Lsi03G018720.1 Lsi03g01872 659622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01872 164 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755|GO:0006457
Lsi03g01872 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 1 5 163 - -
Lsi03g01872 164 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 162 IPR002130 GO:0000413|GO:0003755
Lsi03g01872 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 163 IPR044666 -
Lsi03g01872 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Lsi03g01872 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413|GO:0003755
Lsi03g01872 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Lsi03g01872 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413|GO:0003755
Lsi03g01872 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413|GO:0003755
Lsi03g01872 164 PIRSF Peptidylpro_ismrse 3 164 IPR024936 GO:0003755
Lsi03g01872 164 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 161 IPR002130 GO:0000413|GO:0003755
Lsi03g01872 164 Gene3D - 3 164 IPR029000 -
Lsi03g01872 164 SUPERFAMILY Cyclophilin-like 11 162 IPR029000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00105 Lsi-Chr3:1455304 Lsi03g01872 Lsi-Chr3:30129789 1.10E-51 dispersed
Lsi03g01872 Lsi-Chr3:30129789 Lsi04g01412 Lsi-Chr4:21886571 6.04E-47 dispersed
Lsi11g00968 Lsi-Chr11:15224063 Lsi03g01872 Lsi-Chr3:30129789 1.36E-12 dispersed
Lsi03g01872 Lsi-Chr3:30129789 Lsi11g01025 Lsi-Chr11:17432350 7.09E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01872 K12733 - csv:101222111 335.88