Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01909 ATGGAAATTTTCTTTCTTCTTCACCCAATTTTTATCCTTTTCTTTCTCCTTTTCTTTCTCTCTATAATCTTTTTCCTATTGAAGCCTAAATTTCTCTGCAACTGTGAAATTTGCCAAGCTTATTTGGCCTCATCTTGGTCCAAAGATTTCTTTAACCTCTGTGATTGGTATTCCCATCTTCTTCGGCAGTCTCCGACGAAGACTATTCACATTCACGTTTTAAGGAACACGATTACGGCCAATCCCGACAACGTGGAATACATTCTCAAGACAAAGTTTGAAAATTACCCAAAAGGGAAAATCTTCTCCTCGATTCTTGGCGATTTTTTGGGCCGTGGGATTTTCAATGTCGATGGGGATTTGTGGCGGTTTCAGAAGAAAATGGCGATTCTCGAGCTTGGTCAGCAGTCGATTAGATCCTACTGCTTTGAAATTGTTTCTCACGAGGTTCATTCTCGGCTTTTGCCGCTTCTTTCGTCGGTTGCCGACGGCGGCGTTGGCGGAGTTTTGGATTTGCAGGACGTGTTTAGGAGATTTGCTTTTGATAGTATTTGTAAGTTTTCGTTTGGGTTGGATCCAATGTGCTTGGAGCTGTCTCTTCCGATGTCGGAATTTGCCGTCGCTTTCGATCTCGCTTCTAAGCTTTCTGCTGAAAGAGCCATGGCGGTCCCGCCGTTGATCTGGAAAATCAAGCGAATGCTCAACTTAGGTACAAAAGAAGAAAAACAAAACGTCGATTATGTCAATTTAGCTATGTTTATAACCTATTTATTTATGTTTCTTTTTACAGGTAGTGAGCGGGAATTAAAGAAAGCAATAGAGCTAATAAACATGTTGGCTCATGAAGTAATTCGACAAAGAAGAAAATTAGGATTCTCGACCCACAGGGACCTCCTCTCTCGATTCATGCGAACTGTGTCTGATGAAACTTTCTTACGAGACATTGTTGTTAGCTTTCTTTTAGCCGGCCGCGATACCATTGCCTCGGCCCTCACTAGCTTCTTTTGGGTTCTTTCCACCCATCCTACCGTAGAGTCTGCTATCCAACTCGAGGCCGATCGAGTCATTGGTCCCAACTCGGACCCTACATCCTTCGACCAAATCCGAAACCTCCATTACTTACAAGCTGCTATCTTTGAGTCCATGAGGTTATATCCTCCCATTCAATTTGATTCCAAGTTTTGCCAAAACGACGATGTTTTACCCGACGGGACTTTCGTCCAGCGTGGTACTCGGGTTACTTACCACCCCTATGCTATGGGTCGGGTCAAGCAAATTTGGGGTTCGAACTGCCTCGAGTTCAACCCAGAACGGTGGCTGAAAGATGACATATTTTGCTCTGAAAATCCATTCAAGTACCCAATTTTTCAAGGTGGTTTTCGGTTTTGTTTAGGGAAAGAAATGGCTCTTGCTGAGTTGAAAATTGTAGCACTTTCCCTTATTCGTCGTTTTCAAATCCAACCCACGACACCATGTGTGGCACCACGATTCTCCCCTGGTCTCACTGCAACTTTCTGTAGTGGATTTCAAGTTTTCATCGATAAGAAGAAGAAATCGAACTAA 1563 43.25 MEIFFLLHPIFILFFLLFFLSIIFFLLKPKFLCNCEICQAYLASSWSKDFFNLCDWYSHLLRQSPTKTIHIHVLRNTITANPDNVEYILKTKFENYPKGKIFSSILGDFLGRGIFNVDGDLWRFQKKMAILELGQQSIRSYCFEIVSHEVHSRLLPLLSSVADGGVGGVLDLQDVFRRFAFDSICKFSFGLDPMCLELSLPMSEFAVAFDLASKLSAERAMAVPPLIWKIKRMLNLGTKEEKQNVDYVNLAMFITYLFMFLFTGSERELKKAIELINMLAHEVIRQRRKLGFSTHRDLLSRFMRTVSDETFLRDIVVSFLLAGRDTIASALTSFFWVLSTHPTVESAIQLEADRVIGPNSDPTSFDQIRNLHYLQAAIFESMRLYPPIQFDSKFCQNDDVLPDGTFVQRGTRVTYHPYAMGRVKQIWGSNCLEFNPERWLKDDIFCSENPFKYPIFQGGFRFCLGKEMALAELKIVALSLIRRFQIQPTTPCVAPRFSPGLTATFCSGFQVFIDKKKKSN 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30459274 30461577 + Lsi03G019090.1 Lsi03g01909 659659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01909 520 PANTHER CYTOCHROME P450 260 510 - -
Lsi03g01909 520 PANTHER CYTOCHROME P450 FAMILY PROTEIN, EXPRESSED 260 510 - -
Lsi03g01909 520 PRINTS P450 superfamily signature 322 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01909 520 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01909 520 PRINTS P450 superfamily signature 463 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01909 520 Pfam Cytochrome P450 76 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01909 520 PRINTS E-class P450 group I signature 311 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01909 520 PRINTS E-class P450 group I signature 463 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01909 520 PRINTS E-class P450 group I signature 331 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01909 520 PRINTS E-class P450 group I signature 453 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01909 520 Gene3D Cytochrome P450 52 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01909 520 SUPERFAMILY Cytochrome P450 52 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01909 520 PANTHER CYTOCHROME P450 FAMILY PROTEIN, EXPRESSED 14 249 - -
Lsi03g01909 520 PANTHER CYTOCHROME P450 14 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00109 Lsi-Chr3:1522966 Lsi03g01909 Lsi-Chr3:30459274 0 dispersed
Lsi03g01909 Lsi-Chr3:30459274 Lsi05g00982 Lsi-Chr5:17155109 1.56E-115 dispersed
Lsi03g01909 Lsi-Chr3:30459274 Lsi06g01637 Lsi-Chr6:26666402 6.54E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01909 K20624 - csv:101207686 855.129