Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01929 ATGTCTTCTTCTTCCGGTCGCCACCCCGTCTACCGAGGCGTTCGCCGCCGCAACACCGGCAAATGGGTTTCCGAAATTCGCGAGCCAAGGAAGCCCAACCGTATTTGGTTGGGAACTTTCCCGACCGCCGAAATGGCTGCTGTTGCTTACGACGTTGCCGCCCTTGCCCTCAAGGGTCAAGACGCCGAGCTTAATTTTCCTAATTCTGCCTCCTCTCTCCCCGTCCCCGCGTCTAGGTCACCATCTGATATTCAGGCGGCGGCTGCATCGGCTGCCGCTGCTCTTGGAGCGGCTGCAGCGGCCATGGAGGCTCGGAATAATAACGGTTCTCGTCGTGGAACTAATTTGGGCGACGTCGTGTATGGAGGAAGGTATGGTCAAGATGGATTGGGAAATCAGTTCATGGATGAGGACTTGATCTTTGATATGCCTAATGTTTTAATGAACATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAATAGCGGAGACGACGGCGCTGACGACGGCGCTGACCAAAATCTTTGGAATTTTCCCTAA 543 54.33 MSSSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAMEARNNNGSRRGTNLGDVVYGGRYGQDGLGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNSGDDGADDGADQNLWNFP 180
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 30689276 30689818 - Lsi03G019290.1 Lsi03g01929 659679
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01929 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 3 180 - -
Lsi03g01929 180 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Lsi03g01929 180 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
Lsi03g01929 180 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Lsi03g01929 180 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Lsi03g01929 180 SUPERFAMILY DNA-binding domain 10 69 IPR016177 GO:0003677
Lsi03g01929 180 MobiDBLite consensus disorder prediction 160 180 - -
Lsi03g01929 180 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Lsi03g01929 180 Pfam AP2 domain 9 59 IPR001471 GO:0003700|GO:0006355
Lsi03g01929 180 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700|GO:0006355
Lsi03g01929 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 180 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Lsi01g01248 Lsi03g01929 CCT
Lsi01g01248 Lsi03g01929 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01248 Lsi-Chr1:10668807 Lsi03g01929 Lsi-Chr3:30689276 2.46E-58 dispersed
Lsi03g01929 Lsi-Chr3:30689276 Lsi05g01266 Lsi-Chr5:20431416 1.76E-45 dispersed
Lsi03g01928 Lsi-Chr3:30676717 Lsi03g01929 Lsi-Chr3:30689276 9.35E-33 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25060 PF00847 AP2 8.50E-13 CL0081 Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01929 - - csv:101203380 278.485