Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g01929 | ATGTCTTCTTCTTCCGGTCGCCACCCCGTCTACCGAGGCGTTCGCCGCCGCAACACCGGCAAATGGGTTTCCGAAATTCGCGAGCCAAGGAAGCCCAACCGTATTTGGTTGGGAACTTTCCCGACCGCCGAAATGGCTGCTGTTGCTTACGACGTTGCCGCCCTTGCCCTCAAGGGTCAAGACGCCGAGCTTAATTTTCCTAATTCTGCCTCCTCTCTCCCCGTCCCCGCGTCTAGGTCACCATCTGATATTCAGGCGGCGGCTGCATCGGCTGCCGCTGCTCTTGGAGCGGCTGCAGCGGCCATGGAGGCTCGGAATAATAACGGTTCTCGTCGTGGAACTAATTTGGGCGACGTCGTGTATGGAGGAAGGTATGGTCAAGATGGATTGGGAAATCAGTTCATGGATGAGGACTTGATCTTTGATATGCCTAATGTTTTAATGAACATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAATAGCGGAGACGACGGCGCTGACGACGGCGCTGACCAAAATCTTTGGAATTTTCCCTAA | 543 | 54.33 | MSSSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAMEARNNNGSRRGTNLGDVVYGGRYGQDGLGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNSGDDGADDGADQNLWNFP | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30689276 | 30689818 | - | Lsi03G019290.1 | Lsi03g01929 | 659679 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g01929 | 180 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 | 3 | 180 | - | - | |
Lsi03g01929 | 180 | CDD | AP2 | 11 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi03g01929 | 180 | PRINTS | Ethylene responsive element binding protein signature | 11 | 22 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi03g01929 | 180 | PRINTS | Ethylene responsive element binding protein signature | 33 | 49 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi03g01929 | 180 | ProSiteProfiles | AP2/ERF domain profile. | 10 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi03g01929 | 180 | SUPERFAMILY | DNA-binding domain | 10 | 69 | IPR016177 | GO:0003677 | |
Lsi03g01929 | 180 | MobiDBLite | consensus disorder prediction | 160 | 180 | - | - | |
Lsi03g01929 | 180 | SMART | rav1_2 | 10 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi03g01929 | 180 | Pfam | AP2 domain | 9 | 59 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi03g01929 | 180 | Gene3D | AP2/ERF domain | 10 | 69 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi03g01929 | 180 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 3 | 180 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi01g01248 | Lsi03g01929 | CCT | |
Lsi01g01248 | Lsi03g01929 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01248 | Lsi-Chr1:10668807 | Lsi03g01929 | Lsi-Chr3:30689276 | 2.46E-58 | dispersed | |
Lsi03g01929 | Lsi-Chr3:30689276 | Lsi05g01266 | Lsi-Chr5:20431416 | 1.76E-45 | dispersed | |
Lsi03g01928 | Lsi-Chr3:30676717 | Lsi03g01929 | Lsi-Chr3:30689276 | 9.35E-33 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25060 | PF00847 | AP2 | 8.50E-13 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g01929 | - | - | csv:101203380 | 278.485 |