Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01930 ATGGAAATGGACGATCAATATGCCCTCTCCGATCTCCGCCACCTCATGACTACTGCCCCATCTCGTTCCCATTTCCCTTCTTCTTCCTCAATTCCCCACCATGATCTCTCATCCTCCTCCGCCGCCGCCGCCTTCCGACACCACCATAGTCCCTACGACTTTATCATGATGATGCCACGTGACACTCCGCTACCCGACTTTCGCTCCGATTCCGCCACCACGCCCCCTGCCATCGTCTCCGCTCAGCCAGGTCCCACCGCTTTCGAGCTCGAAACCGCCTCCATCGCCGCCGACTGCGCCACCGCCCGATGGCCTCGCCAAGAAACTCTTACTCTCTTGGATATCAGATCTCGACTTGATTCTAAGTTTAAAGAAGCCAACCAAAAAGGCCCCCTTTGGGATGAAGTTTCTAGCATTATGGCTGAGGAACACAATTATCAAAGAAGTGGGAAAAAATGCAGAGAAAAGTTTGAGAATTTATATAAATATTACAAAAAAACAAAGGAAGGCAAAGCTGGAAGACAAGATGGCAAGAACTACAGATTCTTTAGGCAGTTGGAAGCTCTCTATGGTGAAACAAGCAATTCCCCTTCACTTCCAGATTCCCATTTTGTTGGAGACACCAACCCCAGATTCCAACAAAATGGGACCAACAACCCAACCGCGGCAGCTCCGATGAGCCACGAAGCTCATCAGAAGCATTACTATGACAGCCTCAGCCTCTCTCACACATCGGAGTTCGAAACCTCGGCGTCGTCAGATGGTGACGACGACCTCGGCTCGGTTGGCATAATGGACAATGATTCAATGGAGAAGAGAAGGAAGAAGCGAGGAGGGAAATGCTGGAAGGCAAAAATCAAACAGTTCATCGACTCGCAAATGAGGAAGCTAATTGATAAACAAGAGGCTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAGAGGATGATTCGCGAGGAGGAATGGAGGAGACAAGAAGTGTCAAGAATGGACAGAGAGAGAAGCTTTTGGGCAAAGGAGAGAGCGTGGATAGAATCTAGAGATGCAGTATTAATGGATGCATTACAAAGGCTAACAGGACGAGAATTGAGAGATAATCAATACAATTCGTCGCCCGACCACGGATTAATCGTAGCCGAGCGTCATCGAAATAATAACGAGAACCAAAACGAAGATGGGAGCGAAATACTAAACAACAACACAGCTAGAGAATTACTAGCTGACAACAATAATTACCAAAGGAAAATAATAGATCATAATCAAGGCAACAAGAAACGCAAGGAGAATTCAACATCAACAGCCACCACCTACAATCTTTACTTCCAACAAACAGATTCCTCCCTCTACAGCCGCAGCGGTGGCGGACCGTACGGCGGTGCCACTGACATCAAAGAACAAAGTCCAAACAGTTCGAACGCAGGCGGCGGCAGTGGCGGCGGCGGCGTTGTGCAAGATAATTGCTTTCGCTTCTTGATGGGTGAAGGAGATCAATCTCAATCTGGTTTATGGGAAAATTTTGGTCTTAAACTCAACAATGGAAGTGACCAAACTTGA 1566 47.51 MEMDDQYALSDLRHLMTTAPSRSHFPSSSSIPHHDLSSSSAAAAFRHHHSPYDFIMMMPRDTPLPDFRSDSATTPPAIVSAQPGPTAFELETASIAADCATARWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSSIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNSPSLPDSHFVGDTNPRFQQNGTNNPTAAAPMSHEAHQKHYYDSLSLSHTSEFETSASSDGDDDLGSVGIMDNDSMEKRRKKRGGKCWKAKIKQFIDSQMRKLIDKQEAWLEKLMKTLEQKEKERMIREEEWRRQEVSRMDRERSFWAKERAWIESRDAVLMDALQRLTGRELRDNQYNSSPDHGLIVAERHRNNNENQNEDGSEILNNNTARELLADNNNYQRKIIDHNQGNKKRKENSTSTATTYNLYFQQTDSSLYSRSGGGPYGGATDIKEQSPNSSNAGGGSGGGGVVQDNCFRFLMGEGDQSQSGLWENFGLKLNNGSDQT 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30716371 30720956 + Lsi03G019300.1 Lsi03g01930 659680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01930 521 Pfam Myb/SANT-like DNA-binding domain 103 189 IPR044822 -
Lsi03g01930 521 MobiDBLite consensus disorder prediction 467 481 - -
Lsi03g01930 521 Coils Coil 298 325 - -
Lsi03g01930 521 MobiDBLite consensus disorder prediction 452 483 - -
Lsi03g01930 521 PANTHER - 19 411 - -
Lsi03g01930 521 PANTHER - 419 508 - -
Lsi03g01930 521 MobiDBLite consensus disorder prediction 246 276 - -
Lsi03g01930 521 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 19 411 - -
Lsi03g01930 521 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 419 508 - -
Lsi03g01930 521 CDD GT1 103 168 - -
Lsi03g01930 521 MobiDBLite consensus disorder prediction 502 521 - -
Lsi03g01930 521 Gene3D - 104 166 - -
Lsi03g01930 521 ProSiteProfiles Myb-like domain profile. 103 161 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01930 Lsi-Chr3:30716371 Lsi04g00132 Lsi-Chr4:1531113 6.76E-57 dispersed
Lsi03g01930 Lsi-Chr3:30716371 Lsi03g02220 Lsi-Chr3:33225176 1.47E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25061 PF13837 Myb_DNA-bind_4 3.60E-19 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01930 - - csv:101209675 889.412