Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01941 AATATTACGAAAACGCCACTGCGCCTAAAAAGTCAGTCCTTCCTGTATGGTTCTCAGCTTCTCTCCGACAATCGAATTCCAGAAAGAGACACACACCGGAAAGGTGAAAAATCGAAGAGAGGGGAATTCTTCATCGCTTCGATGGGTCCAAACGGATTCCAGGTGATCGGAATTATCAGAATCTCGATGGAAATGCCCGGCAGGAGGTTGAACTATACGCTTCTCAGTCAAATTCCAGACGACCAATACAGTGGCGGTGTTGCCGGAGCTTCGACATCGTTTAAAGAAACATCATCGGGAGAGGGGAAGAACGACAGGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGCTGGTGATCACAGGGCGGGCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCAAGTGGAAGTAGCTTTGGAGAGAGCTCGATATCTGGGGAGTACTATGCACCGACACCATCTACTACGGTGGCTAACGAGACGGATGGGTTTGGCTGTACGCACGACGATGTGCTTAGAATTGGAGGCGATTCGAGAGCACAGGCGGCTGAAATGGCCGCTGGGGCTGGAGGATCTTCTGCTAAGACCTGGGCGCAACAGACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTTCGGCTTTCATCTGTGGCGACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCATTAAGGAGGTCGATAAGCTCTGTTGAGGCCTTGTCACATCGATTTTGGGTAAATGGCTGTCTATCGTACTTTGACAAAGTTCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTATGGACAGTGTGCACCAGCCTACCTGACAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCCAGTACAGATTCGTCAATTGAAGTTGTTCTGATTGATCGGCGCACTGATCCCAACTTAAAGGACCTCCAAAATTGGGTCCAAAGCATTTCTTGCAGCTCTATAACTACAGAAGAGACCAGCTTGCAAAACTTGTCTGTAGGAGTTTGGGGTGAGACATTCACACTTACATTTGGAAACTTGTCTATTTCATTCAATACCAATAACTTCCTTTCTATTAGTACCAACAGTGGCTCAGTTTCTGGAGAAGATGCGTTGGTGTCCATCTGGAGGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTATTCCTCTTGGTGGACTCTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGCTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTAGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTTGACTTAATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTGATCTCCTCGCCGTTGCGATTTCCACGACTAAAGCCAGTAGAGCCTGCCATCGATTTCAGGTCACTGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTTAATGTTGTTTTCGATGAAGCTACCTCATGTAATCACTCAGGTTTGTTAGTTATCATCACAGAAATTACTGTGGATGGAGAAGATGGCGCAATCCCATTGTATCTAAAGCAGTTTGATAGGAAGTTCACAAACAGAAGCAACCAAATGCTTGTCCCTGGTGATACTGATGAAAAATCCATTTTACTGCATGCAAAAACTTCGCAGCCTAACTCTCAAGACAGAGATTTCCAACTGTATAAACCACGTGATAATTCTCATAATGTTATACAACCAACTGTCCTGGTGGACGATTCAATCCCATTGAAGTACATTCCACATATTAATCGTGGAAGTGTGCAGTCCCTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGACGTAAGGTTTGCACCAGGAGGTCAGCTAATACCAAGCACTCGGAGTAAAACACTTCCCCTCGGTGCGGAGGATTTGGACATTCCATGGAGTGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCCTTCGGAACTGTGCATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTACGACATCCTAATATTGTATTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTGTCCATTGTCACTGAATATCTATCGAGGTTTTCTTTTACTATCTTCTTTCTCCTAATCAATGTTGAAAAAGTTAGCATAAAATATTTAGTAAACTTTGTGCTACACATAAAAACAAAACGGATAGAAAATGATCCAAAGTTGAAGAATTGGTTTTATGTGCAGAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACACGTCGGATAAATATGGCTTTTGATGTGGGAGGGGGAACATCAATTTTCAACATTGAAAACAAAATAAAAAGTGTCATGCTATCTGATGATATGCTCGACAAAACGGAGCTCAGAGTTTGTGATTTTGGTCTGTCTCGTTTAAAGGCACGCACATTTCTTTCATCCAAATCCGCAGCTGGAACACCTGAATGGATGGCACCAGAAGTACTACGTGATGAACCCTCAAATGAAAAGTCAGATGTTTACAGCTTTGGAGTGATTTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTGAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCGCGTGATGTAAATCCCAAATTGGCTTCCGTAATAGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTTTCCAGCATAATGGAAACCTTGAAACCAATGACTAAACAAGCACCACCTCAACAAGGTCGTGCAGACACACTCTCGGTTATGTGA 3003 44.36 NITKTPLRLKSQSFLYGSQLLSDNRIPERDTHRKGEKSKRGEFFIASMGPNGFQVIGIIRISMEMPGRRLNYTLLSQIPDDQYSGGVAGASTSFKETSSGEGKNDRRKLERGLDWEAAGDHRAGQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDGFGCTHDDVLRIGGDSRAQAAEMAAGAGGSSAKTWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFQDDSALRRSISSVEALSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWTVCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDRRTDPNLKDLQNWVQSISCSSITTEETSLQNLSVGVWGETFTLTFGNLSISFNTNNFLSISTNSGSVSGEDALVSIWRECSDNLKETLGSVVIPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPVEPAIDFRSLAKQYFSDCQLLNVVFDEATSCNHSGLLVIITEITVDGEDGAIPLYLKQFDRKFTNRSNQMLVPGDTDEKSILLHAKTSQPNSQDRDFQLYKPRDNSHNVIQPTVLVDDSIPLKYIPHINRGSVQSLLDMSQPRMDSTMDVRFAPGGQLIPSTRSKTLPLGAEDLDIPWSDLVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRFSFTIFFLLINVEKVSIKYLVNFVLHIKTKRIENDPKLKNWFYVQRLLHKSGVKDIDETRRINMAFDVGGGTSIFNIENKIKSVMLSDDMLDKTELRVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASVIVACWADEPWKRPSFSSIMETLKPMTKQAPPQQGRADTLSVM 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30804861 30817034 - Lsi03G019410.1 Lsi03g01941 659691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01941 1000 ProSitePatterns Protein kinases ATP-binding region signature. 696 717 IPR017441 GO:0005524
Lsi03g01941 1000 MobiDBLite consensus disorder prediction 86 108 - -
Lsi03g01941 1000 CDD STKc_MAP3K-like 696 980 - -
Lsi03g01941 1000 Gene3D Phosphorylase Kinase; domain 1 683 768 - -
Lsi03g01941 1000 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 196 994 - -
Lsi03g01941 1000 ProSiteProfiles Protein kinase domain profile. 690 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01941 1000 Pfam Ethylene-responsive protein kinase Le-CTR1 255 483 - -
Lsi03g01941 1000 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 196 994 - -
Lsi03g01941 1000 SUPERFAMILY Protein kinase-like (PK-like) 672 980 IPR011009 -
Lsi03g01941 1000 Pfam Protein tyrosine and serine/threonine kinase 691 980 IPR001245 GO:0004672|GO:0006468
Lsi03g01941 1000 Gene3D Transferase(Phosphotransferase) domain 1 813 994 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01250 Lsi03g01941 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01941 Lsi-Chr3:30804861 Lsi04g02284 Lsi-Chr4:29872057 1.53E-64 dispersed
Lsi04g01431 Lsi-Chr4:22044056 Lsi03g01941 Lsi-Chr3:30804861 6.68E-26 transposed
Lsi01g01250 Lsi-Chr1:10677564 Lsi03g01941 Lsi-Chr3:30804861 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83510 PF07714 PK_Tyr_Ser-Thr 5.80E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01941 K14510 - csv:101208452 1501.88