Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01948 ATGGATATTGAAATTGCAGGGTTTATTTTATTGTTATTTTTGTGGGGTTTATGGGTATGGCGCCGTCGTGGAGCGGCGGCCGATGAGCAGCTCCCGCCGGGGCCGCCTTGTTGGCCGGTGGTTGGAAACTTGCTTCAACTCAGTTTTTCCGCTCATGAATCCTTCACAAAACTCGCCGCCAAGTATGGCCCAATCATGACCCTCCAACTCGGGTCAATGAAAACAGTAGTTGTTTCCTCAAGCACGGCGGCGCGTGAGATGTTCAAATCCCACGATGCGCCGCTGTCAGGACGCATGATATACGAGGCAATGAAAGGGGACCACGGCACAGAAGGTTCCTTAATCACCTCCCAATATGGGCCCCACTGGCGGATGCTACGACGACTCGCAACGTCAGAGTTCTTCATCACTCGTCAGCTCGAAGCCATGAAATACGTCCGTCGTCGGTGTATCGACGCCATGATCCGCCACATCGAAGAGGAAATAGAGAGTGCCGCGAGCGGGGCGTGTGGGAACGCGCCGCCGTTGGACTTGGGGAAATTTATGTTCATAATGAGCTTTAATTTAATTGGGAATCTGATATTCTCAAAAGATTTATTAGAGGCAAATTCGAAGAGGGGAAATGAATTTTATTACCATACGAGAAAGGTGATGGAGATGGCCGGAAAGCCAAATGTGGCGGACTTTTTGCCGGCGTTACGGTGGGTGGATCCGCAGGGGATTAGGAGGAAGACGCAGTTTCATGTGAATAAAGCATTTGAAATTGCAGGGGAATTTATAAAAGAGAGATTATTAATAAAGGAAAAAGGGAATATTATTATTACTGATGAAAGAAAAGAAGAAAGGAAAAAAGATTATTTGGATGTGCTTTTGGAGTTTCGTGGCGATGGGGTTGAGGAGCCTTCTCATTTCTCTTCTTGGATCATCAACGTTATTATCTTCGAGATGTTCACGGCGGGGACAGACACCACCACCAGTACACTAGAATGGGCAATGGCGGAGCTCCTCCACAACCCGGCAGCGCTGCAGAAACTTCAGGCGGAGCTCCGAGCCACCATCCCGCCGAATGGCAACCTTGAAGAAACCCATCTCCAAAACCTCCCGTATCTCGACGCCGTCGTTAAAGAAACCCTCCGCCTCCACCCACCACTGCCGTTCCTTTTCCCGAGAATGGCCATGAAGCCCTGCAAAATCTTCGGCTATCGAATTCCGGCTGAAACCCAAGTCTTGGTCAACTTCTGGGCCATCGGCCGAGACCCCAAAAACTGGAAAGACGCTTTGGTTTTCTCGCCGGAGAGATTCTTGGATCCCACCGGTGGAAAGGATTTCAAGGGTCAGCACTTTGACTTCATTCCATTTGGCTCCGGCCGCCGCATGTGCCCGGCGGTGCCGCTGGCGTCGAGGGTTCTTCCAATGGCTTTGGGGTTATTGATTATGTCGTTTGATTGGGCTTTGCCGGACGGAATTTCGCCGGAGGAGATGGATATGTCGGAGCAAATGGGAATTACTCTCCGAAAGAAGGTTCCATTGAAGGCTATTCCGACTCCTCACAAACGACGTCGTTTTGATTAA 1572 50.19 MDIEIAGFILLLFLWGLWVWRRRGAAADEQLPPGPPCWPVVGNLLQLSFSAHESFTKLAAKYGPIMTLQLGSMKTVVVSSSTAAREMFKSHDAPLSGRMIYEAMKGDHGTEGSLITSQYGPHWRMLRRLATSEFFITRQLEAMKYVRRRCIDAMIRHIEEEIESAASGACGNAPPLDLGKFMFIMSFNLIGNLIFSKDLLEANSKRGNEFYYHTRKVMEMAGKPNVADFLPALRWVDPQGIRRKTQFHVNKAFEIAGEFIKERLLIKEKGNIIITDERKEERKKDYLDVLLEFRGDGVEEPSHFSSWIINVIIFEMFTAGTDTTTSTLEWAMAELLHNPAALQKLQAELRATIPPNGNLEETHLQNLPYLDAVVKETLRLHPPLPFLFPRMAMKPCKIFGYRIPAETQVLVNFWAIGRDPKNWKDALVFSPERFLDPTGGKDFKGQHFDFIPFGSGRRMCPAVPLASRVLPMALGLLIMSFDWALPDGISPEEMDMSEQMGITLRKKVPLKAIPTPHKRRRFD 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30870793 30874625 - Lsi03G019480.1 Lsi03g01948 659698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01948 523 SUPERFAMILY Cytochrome P450 32 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Lsi03g01948 523 PANTHER CYTOCHROME P450 FAMILY 1 1 517 - -
Lsi03g01948 523 Pfam Cytochrome P450 32 505 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 Gene3D Cytochrome P450 20 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g01948 523 PANTHER CYTOCHROME P450 76A1-LIKE 1 517 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01948 Lsi-Chr3:30870793 Lsi09g00350 Lsi-Chr9:3651984 7.09E-117 dispersed
Lsi11g00082 Lsi-Chr11:866574 Lsi03g01948 Lsi-Chr3:30870793 5.33E-104 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01948 - - csv:101222700 921.383