Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01949 ATGATGATGATGATGATGGGGAAGGAGAAGGTGGAGGCGAAGATTTTCAGTTCAGCCATAGCTTTCTTTTTCTCTCTTACCCTTTTGGTCTCTCCTTCTCTTTCTTCAGATGATTCTTCTGCTCTGACTCGCTTCCGTCTTCAAGCTGATTCCCATGGCGGTTTACTAAGAAATTGGACTGGTTCTGATGCTTGTGCTTCTTCATGGCGTGGAGTTCAGTGCTCTGTTAATGGCCGTGTTGTTGCTCTTTCTCTTCCTTCTATGAACTTACGAGGCCCCATTGAGTCTCTAGCGCCGCTCGATCAGCTTCGCCTTCTTGACCTCCATGACAACCGTTTGAACGGAACCATTTCGCCGCTTGTTAACTGTACGAATCTTAAGCTGTTGTATCTTTCCGGTAATGACTTCTCCGGCGAGATTCCGCCGGAGATCTCGTCTCTCCGGCGACTCCTCCGGCTGGATTTGTCTGATAACAACATCCGGGGTGAAATTCCTGAGGATATTTCTAAATTGTCTCGACTCCTCACGTTACGTTTGCAGAACAATGTCCTCTCCGGTACGGTGCCTGATCTCTCTGTTTCGCTCGCGAATCTCACTGAACTTAATTTAACTAACAATGAACTGTACGGGCGGTTGCCGGATGGGATGATGAAGAAATTCGGTGAGAAGAGTTTCACCGGAAACGAAGGAGTTTGTGGATCGAGTCCGTTACCGATTTGTTCGGTTACTGGTTCACCGCCGGCGTCGGATTCTACCAGAACTGTACCTTCAAATCCAAGTTCATTGCCGCAAAACCCTATTATTAGTTCGAACAGTAAAGAATCTCGAAAAGGGCTCAGCCCCGGCGTAATTGTCGCGATTGTGATCGCGAATTGCGTTGCATTGCTTGTGATTATCTCTTTCATCGTCGCGTATTACTGCGCTCGTGATCGTGATCGGAGTTCGAGCTCCATGACCGGAAGCGAGAGCGGGAAGAGAAGGAAGAGCGGAAGTAGCTACGGAAGCGAGAAGAAGGTGTACGCCAATGGCGGTGGTGACAGTGATGGTACTAACGCTACAGACAGAAGCAAACTAGTGTTCTTCGATTGGAAGAAGCAATTCGAACTTGAAGATTTGCTGAGAGCGTCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGGACGGTTTACCGGGCGGTGCTTGACGACGGTTGTACGGTGGCGGTGAAGAGGTTGAAAGATGCAAACCCATGTCCGAGGAAGGATTTTGAGCAGTATATGGATGTGATTGGGAAGCTGAAGCATCCCAATATTGTGAGATTGAGAGCTTTTTACTATGCTAAAGAAGAAAAGCTTCTGGTTTATGATTATCTTCCTAATGGGAGTCTACATTCTCTTCTCCATGGAAATCGAGGCCCAGGGAGGATTCCATTGGATTGGACGACGAGGATCAGTTTAGTTCTGGGAGCTGCTCGTGGGTTAGCAAGAATCCATGGAGAATACAGTGCTTCAAAGATCCCCCATGGGAATATCAAGTCTTCCAATGTTCTTCTTGACAAAAATGGAGTTGCTTGCATTTCTGATTTTGGGTTGTCTTTGCTTCTCAACCCTGTCCATGCCATTGCAAGGTTGGGAGGCTACAAGGCCCCAGAACAAGACGAGACGAAACGTCTCTCTCAAAAAGCAGATGTTTATAGTTTTGGTGTCTTATTGCTTGAAGTTTTAACGGGGCGTGCACCGACGCTCTACCCATCACCTTCGCACCCGCGAAGCGACGACGAAGAGCAGCCGGTGGACCTCCCGAAATGGGTTCGATCAGTGGTGAAGGAAGAGTGGACAGCTGAGGTTTTTGATCCAGAGCTATTGAGGTACAAGAACATTGAGGAGGAGCTTGTGTCCATGCTTCATGTTGGGTTGGCTTGTGTTTTTCCTCTGCCTGAGAAGAGACCAACAATGGCGGAAGTGACGAAGATGATTGAAGATATTAGGGTTGAACAATCTCCACTCGGAGAAGATTACGACGAATCACGCAATTCGCTTTCACCTTCCCTAGCCACCACAGAAGATGGTATGTAG 2052 48.05 MMMMMMGKEKVEAKIFSSAIAFFFSLTLLVSPSLSSDDSSALTRFRLQADSHGGLLRNWTGSDACASSWRGVQCSVNGRVVALSLPSMNLRGPIESLAPLDQLRLLDLHDNRLNGTISPLVNCTNLKLLYLSGNDFSGEIPPEISSLRRLLRLDLSDNNIRGEIPEDISKLSRLLTLRLQNNVLSGTVPDLSVSLANLTELNLTNNELYGRLPDGMMKKFGEKSFTGNEGVCGSSPLPICSVTGSPPASDSTRTVPSNPSSLPQNPIISSNSKESRKGLSPGVIVAIVIANCVALLVIISFIVAYYCARDRDRSSSSMTGSESGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHPNIVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSASKIPHGNIKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDETKRLSQKADVYSFGVLLLEVLTGRAPTLYPSPSHPRSDDEEQPVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVFPLPEKRPTMAEVTKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGM 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30886044 30889117 + Lsi03G019490.1 Lsi03g01949 659699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01949 683 Gene3D Ribonuclease Inhibitor 97 245 IPR032675 -
Lsi03g01949 683 Gene3D Ribonuclease Inhibitor 32 96 IPR032675 -
Lsi03g01949 683 SUPERFAMILY Protein kinase-like (PK-like) 378 651 IPR011009 -
Lsi03g01949 683 SUPERFAMILY L domain-like 36 216 - -
Lsi03g01949 683 Pfam Leucine Rich Repeat 125 147 IPR001611 GO:0005515
Lsi03g01949 683 MobiDBLite consensus disorder prediction 313 348 - -
Lsi03g01949 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 674 - -
Lsi03g01949 683 CDD STKc_IRAK 380 654 - -
Lsi03g01949 683 MobiDBLite consensus disorder prediction 242 277 - -
Lsi03g01949 683 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Lsi03g01949 683 MobiDBLite consensus disorder prediction 665 683 - -
Lsi03g01949 683 MobiDBLite consensus disorder prediction 658 683 - -
Lsi03g01949 683 ProSiteProfiles Protein kinase domain profile. 374 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01949 683 Gene3D Transferase(Phosphotransferase) domain 1 450 672 - -
Lsi03g01949 683 Pfam Protein kinase domain 378 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01949 683 Gene3D Phosphorylase Kinase; domain 1 347 449 - -
Lsi03g01949 683 MobiDBLite consensus disorder prediction 313 328 - -
Lsi03g01949 683 PANTHER LRR RECEPTOR-LIKE KINASE 19 674 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01949 Lsi-Chr3:30886044 Lsi04g00237 Lsi-Chr4:2405835 1.08E-172 dispersed
Lsi10g00183 Lsi-Chr10:3040323 Lsi03g01949 Lsi-Chr3:30886044 9.64E-77 dispersed
Lsi03g01949 Lsi-Chr3:30886044 Lsi06g00909 Lsi-Chr6:18797364 5.80E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83511 PF00069 Pkinase 8.60E-33 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01949 - - bhj:120091526 1189.1