Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01950 ATGGCTTCCTGTGACGACGACTTCTCTCTCCTCAACGACGATCACCACCATCACCAACACCACCAATCCACCACCAACCACCATCATGTACCAACGCCTCACCACATCCATCCATCCTATGCTTCTCACCGCTTCACGCCTCGAGCGTCTTCCGTTCACGCGCCGCCGCAGCCACCTCCCAATCAACCGGCTCAACCGATTCTCGCGCCGTCTGGAAGTCCGAAGAAGATCGGCGGCCCGATAGATGAGGAAGAGGAGGAAGAGGATGCGGAGGATTATGGTGATGCTGCTTTCTGCTCCAGTTCGTTTGATAATGGAGATCCGAATCGGCTTGGTGTTGGAGTAGATGTGCGGGTTGAGAAGAGGAAGGATCAGTCGGATGAGCTTGCGGAGGAAGGAGGTTCTTATAGTAGTTACAAAAGAGCGAAACCTTCCTCCAGTGGCGGAGAATACAGGAAGGATCGAGAGGAGTGGAGCGATGCGGCTATCTCCTGCCTTCTGGATGCGTATACCGAGAAATTTACGCAGCTGAATAGGGGGAATTTGAGGGGAAGGGATTGGGAGGAAGTGGCTGCAACTGTCAGTGAACGGTGCGAGAAGCAAAGCAAGAGCGTAGAGCAGTGTAAGAATAAGGTGGACAACTTAAAAAAGAGGTATAAGTTGGAGAGGCATAGGATGAGTAACGGTGGCGTTTCGATCAGTCACTGGCCTTGGTTTAAGCAGATGGAGCAAATTGTTGGAAATTCTTTAACAATGAAGGTTGTGTCTGATGAGGATCGGAGTGTTGCCTCCTCAGGGAATACTCCGAGGATATCAAAGAGGTACGTTCTTCCCTCACCCAATACTGCTGGTCACATGAATAATGTAAAACCCAAAGCAGTTACCAGTCCAAGGTGGCGAAGAGTCGTCTTTAAAATCAGTGGTACGGCTCTTGCAGGGACTGGTCCTAACAACATCGACTCAAAGGTTGCAATGGCAATCGCCAGGGAAGTTGTAATGGCTTGTCGCCTGGGTGTGGAGGTGGCAATTGTTGTTGGAGGCCGTAACTTTTTCTGTGGAGACTCTTGGGTGACTACGACAGGTTTAGATAGATGTACAGCATACCAAATTGGTATGATGGCTACTGTGATGAATTCAATACTTCTTCAGTCAGCAATAGAGAAGATGGGAGTTCCGACTCGTGTACAATCTGCATTTATGCTTCAGGAGGTTGCTGAACCATACAGTAGGCAACGTGCTATAAGGCATCTTGAGAAAGGCAGAGTAGTTATATTTGGTGGTATTGGTGCTGGCACTGGAAATCCCCTATTTTCCACTGATACAGCTGCGGCTCTTCGGGCTTCTGAGATTCATGCTGAGGCAGTTCTTAAGGGTACAAATGTTGATGGGGTGTATGACTGCAATTCGCAAGACAACAATTTTACGTTTAAGCACATATCTTTCAGAGAGTTGGTATCAAGAGGTGCCACTAGCATGGACATGACAGCATTAACTTTCTGTGAAGAGAACAACATTCCTGGTACGATCATAATGAAATCCAACCAAAATTTATTTTTACAGTTGTCGTCTTTAATCTTCTTGAGCCTGGAAATATCTCGAAAGCATTATGCGGAGAGCAAGTGGTGGAAGGGTAGGTTAAGGAAATGGATGGGGTACGACAGATTTGAAGTATATTGGTGGTCAATGGTCATGTTATCTCTTTAA 1704 47.36 MASCDDDFSLLNDDHHHHQHHQSTTNHHHVPTPHHIHPSYASHRFTPRASSVHAPPQPPPNQPAQPILAPSGSPKKIGGPIDEEEEEEDAEDYGDAAFCSSSFDNGDPNRLGVGVDVRVEKRKDQSDELAEEGGSYSSYKRAKPSSSGGEYRKDREEWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVSERCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNGGVSISHWPWFKQMEQIVGNSLTMKVVSDEDRSVASSGNTPRISKRYVLPSPNTAGHMNNVKPKAVTSPRWRRVVFKISGTALAGTGPNNIDSKVAMAIAREVVMACRLGVEVAIVVGGRNFFCGDSWVTTTGLDRCTAYQIGMMATVMNSILLQSAIEKMGVPTRVQSAFMLQEVAEPYSRQRAIRHLEKGRVVIFGGIGAGTGNPLFSTDTAAALRASEIHAEAVLKGTNVDGVYDCNSQDNNFTFKHISFRELVSRGATSMDMTALTFCEENNIPGTIIMKSNQNLFLQLSSLIFLSLEISRKHYAESKWWKGRLRKWMGYDRFEVYWWSMVMLSL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30891092 30895961 - Lsi03G019500.1 Lsi03g01950 659700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01950 567 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 1 509 IPR011817 GO:0006221|GO:0009041
Lsi03g01950 567 MobiDBLite consensus disorder prediction 261 289 - -
Lsi03g01950 567 Pfam Amino acid kinase family 301 510 IPR001048 -
Lsi03g01950 567 SUPERFAMILY Carbamate kinase-like 297 514 IPR036393 -
Lsi03g01950 567 PANTHER URIDYLATE KINASE 1 509 - -
Lsi03g01950 567 MobiDBLite consensus disorder prediction 15 154 - -
Lsi03g01950 567 Coils Coil 198 225 - -
Lsi03g01950 567 MobiDBLite consensus disorder prediction 52 67 - -
Lsi03g01950 567 Pfam Myb/SANT-like DNA-binding domain 155 245 IPR044822 -
Lsi03g01950 567 Gene3D - 290 521 IPR036393 -
Lsi03g01950 567 MobiDBLite consensus disorder prediction 114 130 - -
Lsi03g01950 567 CDD AAK_UMPK-PyrH-Ec 300 506 IPR015963 GO:0005737|GO:0006221|GO:0033862
Lsi03g01950 567 MobiDBLite consensus disorder prediction 261 290 - -
Lsi03g01950 567 Gene3D - 158 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01139 Lsi-Chr1:9578210 Lsi03g01950 Lsi-Chr3:30891092 3.32E-69 dispersed
Lsi02g02876 Lsi-Chr2:34965974 Lsi03g01950 Lsi-Chr3:30891092 8.84E-20 dispersed
Lsi03g01950 Lsi-Chr3:30891092 Lsi04g00022 Lsi-Chr4:326814 5.19E-15 dispersed
Lsi03g01950 Lsi-Chr3:30891092 Lsi02g00808 Lsi-Chr2:7508437 2.42E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25064 PF00696 AA_kinase 1.00E-23 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01950 - - csv:101222460 949.503