Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01951 ATGGAACCTAATGGTTTAGGCGGCGGCGGCGGGGTTGGGGGTGGAGGTGGAGGTGGGGGCGGTGGTGGAGGAGGAGGAGGAGGAGGGATGTTTTCAGGCATGAATTCGTCAATGTTGGGATTGGAATTACCACTTCATCAAAACCCAACAAATCCCCCGAATCCTCATCAATTACATCACCCCCCAATGGTGTCTTATGTCCCACACGAGCCCCACCACCACCAACAACCGCCGCCAGTCGCCGTGAAATACCCCTATCCGACGAAGCCTAAGCCGCAGCAGTCGAATCTCAGTGACGACGAGGAGCAGGGATTCGCGGGGGATGATAGTAACGGAGATGGCAAGAAGAAAATGTCGCCGTGGCAGAGGATGAAATGGACGGACATGATGGTCAGGTTGCTGATTACGGCGGTGTTCTACATCGGCGACGAAGGTGGGTCGGAGCCGGCGGACCACGCCGGCAAGAAAAAGCCAGTGGGGTTACTGCAAAAGAAGGGGAAATGGAAATCGGTATCCAGAGCAATGATGGAAAAAGGATTCTACGTTTCACCACAGCAATGCGAAGACAAATTCAACGATTTAAACAAAAGATATAAACGAGTTAACGACATTTTGGGGAAGGGCACAGCCTGCAAAGTTGTCGAGAATCAAACGTTACTGGATTCAATGGAATTAACACCGAAAACGAAAGAAGAAGTACGAAAGTTACTCAATTCTAAACATCTGTTCTTCAGAGAAATGTGTGCTTACCATAACACTTGCCGTCACGGCACCAGCAACAGCGGCGCTCATCCCTCACCGGATGCGACAGCGGAACCATCTCACCTTCCACAACAACAACAGCAACGATGCTTCCACGTGACAGAGACCACAACCTCCGCCGCCGCTGTAGCGGCCGGCGATGGTTTGAAAAGTGGAGATGAAGAGGAGGAGGAGGAGGAAGACGATGAATCGGAGGAGGAGGAGGAAGATGAGGAGGATGAGGAAATTGAAGGAAGGCAAGAAGAGGAGGAGGAAACGGAATCGAGGAAAAGAGCGAGGAAAGGGGGGATTACGGCGGGGATGCAGCAGTTGAGTGCGGAGGTGATGGGAGTTGTGCAGGACGGCGGGAGAAGTCCATGGGAGAAGAAACAGTGGATAAAAAGCCGGTTAATTCAGCTTGAAGAGCAGCAAGTGAGCTATCAAACGCAAGCTTTTGAGCTGGAGAAACAGAGGCTGAAATGGGTGAAGTTCAGAAGCAAGAAGGAGAGGGATATGGAGAGGGCGAAGCTGGAGAATGAGAAGAGAAGGCTGGAAAATGAGAGGATGATGCTGATGGTGAAGCAGAAGGAGTTGGATTTGATGGGTATGCACCATTACCAGCAACAGCAGCAGCAGCATTCGTCGAACAAGCGAGGGGATCCATCGTCGATTACAGGATGA 1422 51.55 MEPNGLGGGGGVGGGGGGGGGGGGGGGGGMFSGMNSSMLGLELPLHQNPTNPPNPHQLHHPPMVSYVPHEPHHHQQPPPVAVKYPYPTKPKPQQSNLSDDEEQGFAGDDSNGDGKKKMSPWQRMKWTDMMVRLLITAVFYIGDEGGSEPADHAGKKKPVGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQTLLDSMELTPKTKEEVRKLLNSKHLFFREMCAYHNTCRHGTSNSGAHPSPDATAEPSHLPQQQQQRCFHVTETTTSAAAVAAGDGLKSGDEEEEEEEDDESEEEEEDEEDEEIEGRQEEEEETESRKRARKGGITAGMQQLSAEVMGVVQDGGRSPWEKKQWIKSRLIQLEEQQVSYQTQAFELEKQRLKWVKFRSKKERDMERAKLENEKRRLENERMMLMVKQKELDLMGMHHYQQQQQQHSSNKRGDPSSITG 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30911440 30912861 - Lsi03G019510.1 Lsi03g01951 659701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01951 473 PANTHER F16F4.11 PROTEIN-RELATED 29 470 - -
Lsi03g01951 473 MobiDBLite consensus disorder prediction 305 336 - -
Lsi03g01951 473 MobiDBLite consensus disorder prediction 258 284 - -
Lsi03g01951 473 MobiDBLite consensus disorder prediction 297 352 - -
Lsi03g01951 473 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 29 470 - -
Lsi03g01951 473 MobiDBLite consensus disorder prediction 72 86 - -
Lsi03g01951 473 MobiDBLite consensus disorder prediction 451 473 - -
Lsi03g01951 473 MobiDBLite consensus disorder prediction 449 473 - -
Lsi03g01951 473 Coils Coil 303 339 - -
Lsi03g01951 473 MobiDBLite consensus disorder prediction 19 119 - -
Lsi03g01951 473 Pfam Myb/SANT-like DNA-binding domain 123 249 IPR044822 -
Lsi03g01951 473 Coils Coil 412 444 - -
Lsi03g01951 473 Gene3D - 126 200 - -
Lsi03g01951 473 Coils Coil 384 404 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01951 - - - csv:101222223 669.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01951 Lsi-Chr3:30911440 Lsi10g01054 Lsi-Chr10:14775625 1.89E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1065 . . . . Bpe04g01554 . . . Cmo06g00430 Cmo14g00250 . . . . . . Cpe08g01055 . . . . . . . . . . . . . . . . . . . . . Cme04g02447 . Blo09g00522 Bda03g01692 . . . . . Sed04g1433 . . Cma06g00433 Cma14g00260 Car06g00372 Car14g00237 Cpe03g00225 . Bhi11g01998 Tan08g1791 Cmetu04g0446 Lac10g2930 Hepe05g0327 . . Cla10g01855 Cam10g1911 Cec10g1966 Cco10g1938 Clacu10g1927 Cmu10g2671 Cre10g2060 Lsi03g01951 Csa03g03362 Chy04g01980 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009757 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25065 PF13837 Myb_DNA-bind_4 3.10E-21 CL0123 Lsi TF