Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g01952 | ATGGGGGCCTCGCTCTCGAACTTGGGTGAAGTTGTTAATGGCTCCACCATCGGTCCTGGCCTCGGAGACATACCGGAGAATTGTGTTGCACGTGTTTTTCTTCATCTTACTCCGCCAGAGATTTGCAACCTCGCGCGGCTTAACAGAGCGTTTCGCGGCGCCGCCTCGTCGGATGCCGTTTGGGAATCAAAATTGCCTTCAAATTATCAAGATCTTCTCGATTTGTTGCCCCCCGAACGGTACCAAAATCTGTCAAAAAAGGACATATACGCACTGCTATCTCGTCCGGTGCCATTCGATGGTGGAAATAAGGTGGAGGTGTGGCTGGACAGAATCACTGGAAGGATTTGCATGTCGATATCGGCGAAGGGCATGGCTATAACTGGAATTGATGATAGAAGATACTGGAATTGGATTCCTACTGAAGAGTCTCGGTTCAATGTTGTGGCATATCTACAGCAAATTTGGTGGTTTGAAGTAGATGGGATGGTGAAATTCCCTTTCCCTGCTGATATCTATACACTGACCTTCAGGCTTCACCTTGGAAGATTCTACAAGCGGCTCGGCCGACGTGTTTGCAGCTTCGAGCATACTCACGGTTGGGATGTAAAGCCTGTACGGTTCGAAATGTCTACTTCTGATGGACAGCAAGCAACCCATGAATTCTGTTTAGACGAGCACGGATTTATTGATGTAAGTGGACACCGCAAGCGAGGATCTTGGATAGAATACAAGGTAGGCGAGTTTTTGGTCAATAAGTCGGGATCAACCACGGAAATTAGATTTTCCATGAAACAGATTGACTGCACGCATTCTAAAGGTGGGCTTTGTGTAGATTCTGTATTTATCGTTCCCAGTATCTTGAAAGAGCGTAAAAGATGA | 882 | 46.83 | MGASLSNLGEVVNGSTIGPGLGDIPENCVARVFLHLTPPEICNLARLNRAFRGAASSDAVWESKLPSNYQDLLDLLPPERYQNLSKKDIYALLSRPVPFDGGNKVEVWLDRITGRICMSISAKGMAITGIDDRRYWNWIPTEESRFNVVAYLQQIWWFEVDGMVKFPFPADIYTLTFRLHLGRFYKRLGRRVCSFEHTHGWDVKPVRFEMSTSDGQQATHEFCLDEHGFIDVSGHRKRGSWIEYKVGEFLVNKSGSTTEIRFSMKQIDCTHSKGGLCVDSVFIVPSILKERKR | 293 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 30920079 | 30923564 | + | Lsi03G019520.1 | Lsi03g01952 | 659702 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g01952 | 293 | ProSiteProfiles | F-box domain profile. | 18 | 64 | IPR001810 | GO:0005515 | |
| Lsi03g01952 | 293 | PANTHER | F-BOX DOMAIN, PHLOEM PROTEIN 2-LIKE PROTEIN-RELATED | 1 | 292 | - | - | |
| Lsi03g01952 | 293 | Pfam | Phloem protein 2 | 116 | 285 | IPR025886 | - | |
| Lsi03g01952 | 293 | PANTHER | F-BOX PROTEIN PP2-A15 | 1 | 292 | - | - | |
| Lsi03g01952 | 293 | SUPERFAMILY | F-box domain | 11 | 91 | IPR036047 | GO:0005515 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g01952 | Lsi-Chr3:30920079 | Lsi07g01414 | Lsi-Chr7:20657229 | 1.22E-102 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g01952 | - | - | csv:101206359 | 597.816 |