Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01953 ATGGAATGGGCTACCGGAAGTTTCAGACCCTTTGTTTCTCGAGCACCTGAATCTTCCTTTGGGTTTCTCTATAACTATAATCTTGAACAATATCAGGGCGTAGATGTGAAGCATTCAGCGATGGCGGGAGCATCGGAGACAGTGCTGCAAGGGCTAGTTCCAGGGATGGATATGAACAGCTATGGCAATTTGGAGAAGAAGAAGCGGCTGAGCAGCGAGCAGCTCGAGTCGCTCGAACGCAGCTTCCAGGAGGAGATCAAGCTCGATCCCGACCGAAAGCAGAAGCTGTCGAAGGAACTTGGTCTGCAGCCTCGTCAGATCGCCGTTTGGTTTCAGAACCGTCGTGCAAGGTGGAAGGCGAAGCAGCTTGAGCATCTCTATGATACTCTCAAACAGGAGTTTGATGCCATTTCTAGAGAGAAACACAAGCTTCAAGAGGAGGTAATGAAGCTCAAGAGCATGCTGAGAGAGCTTCAAGCTGCAAGGAACCAAGTGTCAACGGTGTACACCGACTTGTCGGGCGAGGAGACGGTGGAAAGCACCTCAGTCGGAGCTGGGTGCTCGAGCAAGACAAGACCAGTGGCTGCAGCAGCAGTGGTGGCGGCGGCAAACAACTACCCGACGCCACCGGAGCAGTGCAACTATGTGTTCAACACCGAGGATTACAATCCAATGTCTCCAACTTTCTGGGGCACTCTCCCATCCTCTTATCATCCCCAGTAG 723 52.28 MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGVDVKHSAMAGASETVLQGLVPGMDMNSYGNLEKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQAARNQVSTVYTDLSGEETVESTSVGAGCSSKTRPVAAAAVVAAANNYPTPPEQCNYVFNTEDYNPMSPTFWGTLPSSYHPQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30940390 30944378 + Lsi03G019530.1 Lsi03g01953 659703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01953 240 Coils Coil 61 81 - -
Lsi03g01953 240 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 223 - -
Lsi03g01953 240 Gene3D - 65 125 - -
Lsi03g01953 240 SMART HOX_1 63 125 IPR001356 GO:0003677
Lsi03g01953 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 223 IPR045224 GO:0003700
Lsi03g01953 240 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Lsi03g01953 240 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Lsi03g01953 240 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Lsi03g01953 240 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Lsi03g01953 240 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Lsi03g01953 240 Coils Coil 113 164 - -
Lsi03g01953 240 CDD homeodomain 66 122 IPR001356 GO:0003677
Lsi03g01953 240 SUPERFAMILY Homeodomain-like 55 123 IPR009057 -
Lsi03g01953 240 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01262 Lsi03g01953 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01953 Lsi-Chr3:30940390 Lsi05g00818 Lsi-Chr5:12772727 4.90E-29 dispersed
Lsi01g00699 Lsi-Chr1:5567910 Lsi03g01953 Lsi-Chr3:30940390 6.85E-27 transposed
Lsi01g01262 Lsi-Chr1:10862737 Lsi03g01953 Lsi-Chr3:30940390 2.03E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25066 PF00046 Homeodomain 1.90E-17 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01953 - - csv:101221983 441.425