Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01955 ATGGCTTCGTCGAAGGAAATGAAGAAGGAGAGAGCAGAGGCGGCCGCGACGCTTGCCGCGTCCGACTTGAGAGACGTTAAAAGAGAAGAGGAGCAGCAAGCGGCGGCGCCAAAAACCGAGAGAACAGCCACGGTGGAGGTCGTGGAGGCGGACCAGCCGACGGTGCAAGATCAGCAGCAGAGGTCCGGCGTGATTGGGTCAGTACTGAAGGCGGTGCAGGACACGTACGAACACGCAAAGGAAGCGGTGGTCGGAAAGAGCCACGAAGCAGAGGAGAAAGGCCGAGAGGTAAAGGACGCCTCGGCGGAGAAGGCAAGAGAAACGACTGAGGAAGCACGGAGGAAAATGGACGAGTACGGAAGTGCTGCGGCGGAAAAGGCAAGGGAGACAAAGGAAGCTGCCGGAGAGACGGCAGCAGCAGCAAGGGGGAAAATGAGCGAATGTGGAGAGAAAACAAGAGATAAAACCGGCGAATACAAGGATTATGCGACGGAGAAGGCGAAGGAGACGAAGGATGCAGCGGCGAGAAAAACAGGGGAATACAAAGATTACACGGCGGAGAAGACGTCGGAGGCTAAAGGAAAGGCTGGCGAGTATAAGGATTATACAGCAGAGAAGGCTAGGGAAGCGAAGGATGCGGCGACGAGAAAAGCAGGGGAATACAAAGATTACACGGCCGAGAAGGCTAGGGAAGCGACAGAGTCGGCGAAGGGGAAGGCCGGTGAGTACAAGGATTACGCGGCGGAGAAGGCAAATCAAGCGAAGGAGAAGGCGGCAGAGTACAAGGATTACACGGCGGATAAGGCAAAGGAGACGAAGGATGCGGCAGCAAGAAAAACAGGGGAATACAGAGACTATGCAGCGGAGAAAGCGAGAGAGACGACAGATTACACGGCGGAGAAGGCGAAAGAAGGGAAAGATACGACGGTAAGCAAACTTGGAGAATTGAAAGATTCAGCGGCCGATGCTGCAAAGAGAGCCATGGAATACTTTTCTGGAAAGAAAGAGGAAGCCAAGGAGAAGGCTTACGAGACTGAAGAAGTCGCAAAGACATATAGAGTGAAGGTGCTTAAAAATAAAGTTTTTGAATGGCAGGAAAAGATGGGGGAATCAGAGGAGGATACAAGAAGGAAGATGGAGGAGCTAAGGCTGCAGGGAGAAGGAAGGAGGGGCAGCAGAGAAGAGGCTAAAGTGACACTCGAACGTAATAGAGGCCGTGGCGGTGAGGGAGCGGTGGTGGTAGGTTTGGAGGAGTCGCGGCCAGGGGCATTGGCCTCGACTTTGAAGGAGGCAGATGACATGGCGGGGCAGACGTTCAACGACGTCGGTCGGATGGACGAGGAGGAGGGAGCTGTGCGCTCAAAGGATCGTCAAGGGAAGATGAGCGTACAGTTGTTGCTTATTTTGGACCTTTGA 1416 54.1 MASSKEMKKERAEAAATLAASDLRDVKREEEQQAAAPKTERTATVEVVEADQPTVQDQQQRSGVIGSVLKAVQDTYEHAKEAVVGKSHEAEEKGREVKDASAEKARETTEEARRKMDEYGSAAAEKARETKEAAGETAAAARGKMSECGEKTRDKTGEYKDYATEKAKETKDAAARKTGEYKDYTAEKTSEAKGKAGEYKDYTAEKAREAKDAATRKAGEYKDYTAEKAREATESAKGKAGEYKDYAAEKANQAKEKAAEYKDYTADKAKETKDAAARKTGEYRDYAAEKARETTDYTAEKAKEGKDTTVSKLGELKDSAADAAKRAMEYFSGKKEEAKEKAYETEEVAKTYRVKVLKNKVFEWQEKMGESEEDTRRKMEELRLQGEGRRGSREEAKVTLERNRGRGGEGAVVVGLEESRPGALASTLKEADDMAGQTFNDVGRMDEEEGAVRSKDRQGKMSVQLLLILDL 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30951568 30955626 - Lsi03G019550.1 Lsi03g01955 659705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01955 471 Coils Coil 9 29 - -
Lsi03g01955 471 MobiDBLite consensus disorder prediction 1 62 - -
Lsi03g01955 471 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 236 296 - -
Lsi03g01955 471 MobiDBLite consensus disorder prediction 1 15 - -
Lsi03g01955 471 PANTHER DAUER UP-REGULATED-RELATED 255 451 - -
Lsi03g01955 471 Coils Coil 102 122 - -
Lsi03g01955 471 MobiDBLite consensus disorder prediction 81 135 - -
Lsi03g01955 471 PANTHER DAUER UP-REGULATED-RELATED 1 254 - -
Lsi03g01955 471 MobiDBLite consensus disorder prediction 382 418 - -
Lsi03g01955 471 MobiDBLite consensus disorder prediction 81 158 - -
Lsi03g01955 471 PANTHER DAUER UP-REGULATED-RELATED 236 296 - -
Lsi03g01955 471 MobiDBLite consensus disorder prediction 382 404 - -
Lsi03g01955 471 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 255 451 - -
Lsi03g01955 471 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 1 254 - -
Lsi03g01955 471 Gene3D - 197 250 - -
Lsi03g01955 471 Gene3D - 296 355 - -
Lsi03g01955 471 Gene3D - 251 295 - -
Lsi03g01955 471 Gene3D - 141 196 - -
Lsi03g01955 471 Pfam Late embryogenesis abundant protein 262 304 IPR004238 -
Lsi03g01955 471 Pfam Late embryogenesis abundant protein 143 175 IPR004238 -
Lsi03g01955 471 Pfam Late embryogenesis abundant protein 200 232 IPR004238 -
Lsi03g01955 471 Pfam Late embryogenesis abundant protein 192 221 IPR004238 -
Lsi03g01955 471 Pfam Late embryogenesis abundant protein 163 198 IPR004238 -
Lsi03g01955 471 Pfam Late embryogenesis abundant protein 222 260 IPR004238 -
Lsi03g01955 471 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01955 Lsi-Chr3:30951568 Lsi01g01918 Lsi-Chr1:23716845 2.60E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01955 - - cmo:103486554 567.0