Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01956 ATGGACAAAGCTTCCAAGCATCAGGTATCATTGAGGGGAGCGAGTGCAAAAGAAATTACGAGGGATGCTCTTGTTCAGAAGGTAATCCAGGAGAGAGAGCTACGTCAATATGCAAGAAAAGCGGCAGCTGCGGCTCTCTTTATTCAGAGAGTTTGGAGGCGCTTCAGAGTGACTAAGATAGCTGCTTTGCAGTTTCGAGAAGAATGGGAGGGTTTGGTGAATAGTCATTCTGGTGCATGGGGTGGCTCGCTCATTTCCTATAATATTTTGAGACCATTTCTCTTCTTTATCTCGTCTTTTCTGAAACGACCTCAAAATATCAAGACCAAAGATATAGACTGTATGAAGAATTGCTTTAAAATCTTGTTTGAAAGCATCAATTCTACTGAATCAAAGAACAACTTTTGCTCTTTGGCCACTGGTACATCTGAAGGAAGAAGAATATGGACTTACCAATCAAGGAAGCTTATTTCTGTATGCTTATTTATTCTTGTGCATTTTGACAAGTTGCAAGTGAAGGAACAAGAAATTGTTGTTACAACCTCTTTGGCCATGCGCCTTGTAGTTGTCTTAACTGATCATCATGGGTGGAAGAGTATTAATGAGAATAGTCGTGCTGTTGCTGATGCAGCAGTGAAGGATTTAGTTCATTATCTGGGAACTTCTGAAAGTGGTCTTTACGTATCAGTCAGGCAATACATGTATAAATTGAGTGTCCTCCACTCTACGCAGAACAACAGTACCATTCAGGCAAATGATTTATTAGTTACTACTGTGAGTGCAATAACTTTAGCATTACGACCATTTCATTTAATGAATTTTGATACGATTGGTACTACTTTGTGGGAAGGGCATCATGTTGCTGAACAGTTTTGCTTGTTTCTACTTACAATTCCCGGGCTTGTTCAAAATCTGCCACAAGTTCTTGTGCCAGCTGTAAAGCATCGATCTATCTTGCTACCATGCTTATGGACTCTATTGGTAAGGGCCACTGAGGTTGAACAGATCATTATGGCCAAGAAAGAGACAATTTTGTTGGGAATGTCTGACCTGGATCAGTTATCAGTTGAATGTGGCTCTAAGGTTGTTCCGGCAGTTGGGTGGGCTCTTGCTAACATTATATGTTTGGTAGCAGGGAGTGAAACTAAGGCAAGGGATTCTGGTTGGTTCAGTCAAAGTTTAGACTACGTGTTGTATGTTCGTGTGGTTGTCACTTTGGCAGAAAGCTTTTTGGCTTTGAATGGGGATTTAGGATGTGGTAAAAAGGAGAACCAAGATATCCAGAGCAACAATGTAACTTCTTACGAACCCTCCATTGCAGCTGTTCGCAATAATGAAATGACATCTATGTCCTTAAGCACATCGTTCATTGATATGTTTAGGCCTATTTGTGACCAGAGGCATCTCACAGATCTTTTGAAAATAGTAAATACAGATGTTTATTCTGAAAGTAGCACTGCACAATCAAATAATATGGAACGTATGAAAAGCTTGAAACTGCTCGATATATCATACTTCTACATGTACATGCTCATAATATTTTCATTATTGAATCCGTCGGTCGGATCCTTACCTATTCTTAATATGTTATCTTTTACTCCTGGATTTCTTGTTGATCTGTGGGGAGTGTTAGAAAGTTCCCTTTTCCCCAATAATGCTGATGAAGCTGAAGATCACTTTCCTGGCTCAAGTAAAATATCAAGTAAAAGAAAAGATGAAGTTTTTAGCAAAAAGCAAAACCAAGTCAGTAAGGATGGAAGTAGTAGGTGGGTAACTGTCTTCCATAAGTTCACGAGCAAGTCACAACCAGGTAGTGATCATATGGACACAATTGAAGTTCATTCTAGCTCAAGACATGGGGATGACAACTTATGCGATTTATGGGATATAAAATCTTTGAGTTGTGGTCCACAAGGTATTTCAAAAGATTTGTCATGTCTGCTCTATCTTTTCAGTGCCACTTATGCTCATCTGCTGCTGGAGCAGCAAAGGAAACTTGCATCAATGCTTAACACACTCGTGTATAATGGCTTGTCCCATGCTACTGGTCAGCAAAACACATCCCTTATGGAATCTGCAATCAGGTGCTTGCACCTGCTGTATGAGAGGGATTGCAGACATCAGTTTTGTCCTCCTGCACTATGGCTTTCACCTGCTAGAACAAGTAGACCACCTGTTGCAGTTGCAGCAAGAACTCATGAAGCTTTATCAGCTAACTTACGTGCAGATGATACTTTAACAGTTCCAAGTACTGCAGGCTTTCTACCCTGCGCATATCTTGACTTGAAAGAATATGTATATATGAGCGTAGACCAAGGGGATTGGAGATATGCATATCAGACATGGATGCATATACTGCGATGTGGTCGTTACAATTGGGAGGAATCAACTTTGAGTGAGTTTGGCATTGACGATCCCAAATCGTTGTTGCCGATGTCGACCTGTGGTGAAAATGAACGGCCAATAGGGCTGCTCCCCTTGGCAACCCTGCAAGTTGAAATGTTCAGAGAGTTTGTCAAGATGGACAAAGTCTCCCGGAAAATGGCAGGTGAAGTTGGTGGACCTGGGTCACGATCATTTGAAATTGTAGTTCGTCGTAGCCATGTTGTTGAAGATGGATTCAGACAGTTGAATACTCTTGGGTCAAGGCTGAAATCAGCTATCCATGTTTCATTTGTTAGTGAATGTGGCCTTCCTGAAGCTGGCCAAGACTGTGGTGGATTATCCAAAGAGTTCTTGACTGATATAGCTAAAGCAGCATTTTCACCTGAATATGGACTATTCTCTCAAACGTCTACTCCAGACAGGCATCTTATCCCTAATGCATCTGCACGATGTCTCGACAATGGTATCCAGATGATCGAGTTTCTTGGTAGAGTTGTTGGGAAGGCTCTCTATGAAGGAATTTTGCTTGACTACTCATTTTCGCATGCTTTTGTCCACAAGCTTTTAGGTCGGTATAGCTTCCTTGATGAGCTATCAACACTTGATCCTGAGCTCTACAGGAATCTCATGTATGTCAAGTCTTATGAGGGTGACGTCAAAGAATTGTCGCTGGATTTCACTGTAACTGAAGAATCATTTGGCAAACGACATGTTATTGAGCTTAAACATGGTGGCAAGGATATTTCTGTTACAAATGAGAATAAGATGCAGTATGTTCACGCCATTGCTGATTATAAACTTAATCGACAGTTGCTTTCAGGTGGAAACCATGATATTGACGTCGATGATTTGAGGAAGAATACGCGATATACAGGTGGTTACACAGAGGGCAGCCGAACAATTAGTATTTTCTGGGAGGTTTCGTGTGACGTACCTATATGGGCATCAATAGGAGGACAGGATGTCGAGCGGCTTCCAACTGCTTCCACTTGCTATAATACTCTCAAGGTTATGCCACAGTTTCACCCTGTTTGGAAGGAAAGTAGAGACCAAGTTGCAGTCTACGGTGTCGAGCGTTCGAATCCCTCTAGCCTTGATCAGCCAATAAGGGAAGGACTTTTTATGAAAAACGACGGGATATCAGAGGCAACCAAGCAAACCAATTTTCTAATGGCGAATACATCTTCGAAAACCGGTAACATGGAGCCAATGCTTTTAAAAATTGGCATTCCTTTTGCTCTATCTGCAGCAGGTGGAATATGTGCTATAATGATGGCAAGAGGTTCATTTCCAACTTCCTTAAATCTCTTCAAACCCAAATCAAAACTCATGGAAAATGAGAACTTTCATAGCCATAATCACTCATCTTCAACTTCTTTAGAGGAAGAAGAAATTTTAGAAACTGAGGGAGAAAAAGCCAATGTTGAAGAAGTGATTCTAAGCTTAAAAGGAAGACTTGAAGATCTTGAAAGGAAAGAATTGGATATAGAGAGGCAGTTTATTTGGTACCAAAATTTAAAAGAAAGAGAAGCTTTATTGGTGGAGCTGAAGAACACTTTGGTTATGGATATGGCTCATATCGATTTCTTGGAAAAGGAAATTTTGTTAATGGAAGAAGAAAACAAGAGGTTTGAGAGTTTGGTAACAGAATATTTGGGAGTTTCAGAGCAACTTGAAGGTCAAAAAACAGAAAATAAGTTACTTGAGAGAGAAGTAAAGAAACTTAAGAAGAGATTGAAGGATCAATCAAAGATCATAAGAGAAAAGAATTTGAAGATTGAAGATAGTAAAATACAACTTTGGAGAAATAATGAAGAAATGGAAACAAAGAAAACGATGATAGAGAAATTGGGGAATGAAGTAAAAGAGCTGAAAATGCAAATGGATCGATTGCAAGAGGAGAAGAACAAAGCTGTATCCAACACATCAAAGAACTTTGGACGTATCCTCGACGATTCGTTAACCGGGTATTTGGCTAACTTGCAAGGCTTCTTGTTCTTGCAGATTGAAGCAGAAAAATCAGTAAGAGTGGAGGATTTCAACAAGCTTTCAAATGAATTCAATCAGTTGAAAGATGCATTTGAGGGAAAAGACGGCCATCTCTTTTTTCTTGTCGATGCTCCGTATCGTTTTCACAAGAAGAATCTTCAGAACAAGTCAAAGAATCGCTGCGCTGCTGGGATATATTTCTGCAATGTAGCTGAGGCTGTTAGCACAAGTAGAAGGGCTCTAAGAGGAGCAAAAATACCTGAAAGTGAGTTTACAACTCTCCCAAATGGTCTGAAGTACTATGACTTGAAGGTTGGAGGAGGAACTAAGGCTGTGATTGGATCCCGTGTTGCAGTTCATTATGTGGCTAAATGGAGAGGGATCACCTTTATGACAAGTAGACAAGGGCTTGGTGTTGGTGGAGGAACGCCTTATGGATTTGATGTAGGCCAATCAGAAAGAGGAACAGTCCTCAAGGGATTGGATCTAGGTGTTCAAGGCATGAGGAGATTGCTTATAGTTCCTCCTGAGTTAGCTTACGGAAGCAAAGGGGTTCAAGAAATTCCTCCAAATGCAACAATAGAGAAAACCTGTCCAAGCTGTGGCCCCTTTGAAGTTCCTTATCCTCTGAGTACCAATCCCAACTGTGGTGACTTAGACTATGCTCTTCGTTGTGATTCTCATGCACAGAAACTATACTTTGATGCACTCAATGGAAGTTCATATTCTATCCTCAAAATCAATGCTTCGAGGCAACGTATGGTGATCCAACCATCTCCATGGGTTGCTGGCTCCTGTGTTACTCAAGACATGTTGGTTAGTGAAGGCCTGTGGTTAAACCAATCACTCCCTTTTAACATCACTTCATCAAATACAATTCTCCTCTTGAACTGTTCTCCTCGCCTGCTGGTCTCGCCGCTAAATTGCACTCCTTCAAGTCTCTGTCACCACTACTTGGCAAGTTCAGGACGAGTCGATGGAGAAAGAGCATTTCAGTGTGCAAGTGTTCTTGACCCTTGTTGTACCTTCATCGCTGGTGGGATGCCCTCAGCTTATAAGATAAGGCTTCATAACTCAGGCTGTAGAGCACTCAGGAGTATCCTCCATCTGGATGTAGAAAAGCCTGCAAATCAGTGGGAGGAAGGTTTGGAAATGCAATGGGCTCCTCCACCTGAACCAATCTGTAGAGCTCAATCTGATTGCACTGGAGCGTCGGATTGTCTTCCTACCGGTGGTTCCAATAGCCGTTCTCGTTGCCTTTGCAGAAGTAGCTACTATTGGGATCATATTCTTGGAACATGCCTGAGAACGAATAGGAAGAGCATGGTTAGACTCAGCATAAAGCTCTCGGTATGTCTGGCTTCCTTTTTCATTCTAGCTGCGGTTATAGCTCTAATTACAGTCAGGAAGTCCAGAACTTTCAGTAAACAGGAAAAGCTATGTAAAGAAAGAGAAGATATGTTGAATCTAAGCCATGGCGTTAGACCAGCTAGGATGTTTCATCTGAAAGAAATGAAGAAAGCAACAAATGAATTTTCAAAAGACAGAGTCCTAGGCAGCGGTGGCTTTGGAGAGGTTTACAAAGGTGAACTTCAAGACGGGACTGTCGTAGCCGTGAAGTCGGCTAAAGTGGGTAATCTAAAGAGCACCGAACAGATACTCAACGAAGTCGGAATACTATCTCAAGTAAATCACAGGAATCTTGTGAAACTTATAGGTTGCTGTGTAGAAACTGAGCAACCATTGATGATATATGAATACATTTCCAATGGCACCCTCCATGACCATTTACATGGTAAGATTCCTACTTTCTTGGACTGGAGAAAAAGGCTGAAAATTGCTTCACAAACTGCTGAAGCATTAGCTTATCTGCATTCAGCTGCATATCCACCCATCTATCATAGAGATGTCAAGTCAACAAATATTCTTTTAGATGATAACTTCAATGCTAAAGTCTCAGATTTTGGACTTTCTAGATTGGCTTTGCCAGGAATAAGCCATGTTTCAACTTGTGCACAGGGTACGTTAGGTTACCTAGACCCAGAATACTATCGAAATTACCAATTAACGGATAAAAGTGATGTGTATAGTTTTGGAGTTGTCTTGCTCGAGCTTTTAACCTCTCAGAAGGCCATAGATTTCGCAAGAGATGAAAATTGTGTCAATCTGGCAATCTATGTGATCCAACAAGTGCAAAATGGCGCATTCATTGATGCCATTGATAAACAGCTTATCAGTGATGATCAGTCCAGCAATATTCTGATAAGTGTGAAGCATTTCATGGAGCTCGCACTCGCCTGTTTGAGGGAGAAGAAAGTGGAAAGGCCTTTCATGAAGGATGTACTCCAAGAACTTGAATACATAACTCAGATATTGGACAATCCAGAAACAGTTGCTGAAGAAGGTATGTCTTAA 6789 41.08 MDKASKHQVSLRGASAKEITRDALVQKVIQERELRQYARKAAAAALFIQRVWRRFRVTKIAALQFREEWEGLVNSHSGAWGGSLISYNILRPFLFFISSFLKRPQNIKTKDIDCMKNCFKILFESINSTESKNNFCSLATGTSEGRRIWTYQSRKLISVCLFILVHFDKLQVKEQEIVVTTSLAMRLVVVLTDHHGWKSINENSRAVADAAVKDLVHYLGTSESGLYVSVRQYMYKLSVLHSTQNNSTIQANDLLVTTVSAITLALRPFHLMNFDTIGTTLWEGHHVAEQFCLFLLTIPGLVQNLPQVLVPAVKHRSILLPCLWTLLVRATEVEQIIMAKKETILLGMSDLDQLSVECGSKVVPAVGWALANIICLVAGSETKARDSGWFSQSLDYVLYVRVVVTLAESFLALNGDLGCGKKENQDIQSNNVTSYEPSIAAVRNNEMTSMSLSTSFIDMFRPICDQRHLTDLLKIVNTDVYSESSTAQSNNMERMKSLKLLDISYFYMYMLIIFSLLNPSVGSLPILNMLSFTPGFLVDLWGVLESSLFPNNADEAEDHFPGSSKISSKRKDEVFSKKQNQVSKDGSSRWVTVFHKFTSKSQPGSDHMDTIEVHSSSRHGDDNLCDLWDIKSLSCGPQGISKDLSCLLYLFSATYAHLLLEQQRKLASMLNTLVYNGLSHATGQQNTSLMESAIRCLHLLYERDCRHQFCPPALWLSPARTSRPPVAVAARTHEALSANLRADDTLTVPSTAGFLPCAYLDLKEYVYMSVDQGDWRYAYQTWMHILRCGRYNWEESTLSEFGIDDPKSLLPMSTCGENERPIGLLPLATLQVEMFREFVKMDKVSRKMAGEVGGPGSRSFEIVVRRSHVVEDGFRQLNTLGSRLKSAIHVSFVSECGLPEAGQDCGGLSKEFLTDIAKAAFSPEYGLFSQTSTPDRHLIPNASARCLDNGIQMIEFLGRVVGKALYEGILLDYSFSHAFVHKLLGRYSFLDELSTLDPELYRNLMYVKSYEGDVKELSLDFTVTEESFGKRHVIELKHGGKDISVTNENKMQYVHAIADYKLNRQLLSGGNHDIDVDDLRKNTRYTGGYTEGSRTISIFWEVSCDVPIWASIGGQDVERLPTASTCYNTLKVMPQFHPVWKESRDQVAVYGVERSNPSSLDQPIREGLFMKNDGISEATKQTNFLMANTSSKTGNMEPMLLKIGIPFALSAAGGICAIMMARGSFPTSLNLFKPKSKLMENENFHSHNHSSSTSLEEEEILETEGEKANVEEVILSLKGRLEDLERKELDIERQFIWYQNLKEREALLVELKNTLVMDMAHIDFLEKEILLMEEENKRFESLVTEYLGVSEQLEGQKTENKLLEREVKKLKKRLKDQSKIIREKNLKIEDSKIQLWRNNEEMETKKTMIEKLGNEVKELKMQMDRLQEEKNKAVSNTSKNFGRILDDSLTGYLANLQGFLFLQIEAEKSVRVEDFNKLSNEFNQLKDAFEGKDGHLFFLVDAPYRFHKKNLQNKSKNRCAAGIYFCNVAEAVSTSRRALRGAKIPESEFTTLPNGLKYYDLKVGGGTKAVIGSRVAVHYVAKWRGITFMTSRQGLGVGGGTPYGFDVGQSERGTVLKGLDLGVQGMRRLLIVPPELAYGSKGVQEIPPNATIEKTCPSCGPFEVPYPLSTNPNCGDLDYALRCDSHAQKLYFDALNGSSYSILKINASRQRMVIQPSPWVAGSCVTQDMLVSEGLWLNQSLPFNITSSNTILLLNCSPRLLVSPLNCTPSSLCHHYLASSGRVDGERAFQCASVLDPCCTFIAGGMPSAYKIRLHNSGCRALRSILHLDVEKPANQWEEGLEMQWAPPPEPICRAQSDCTGASDCLPTGGSNSRSRCLCRSSYYWDHILGTCLRTNRKSMVRLSIKLSVCLASFFILAAVIALITVRKSRTFSKQEKLCKEREDMLNLSHGVRPARMFHLKEMKKATNEFSKDRVLGSGGFGEVYKGELQDGTVVAVKSAKVGNLKSTEQILNEVGILSQVNHRNLVKLIGCCVETEQPLMIYEYISNGTLHDHLHGKIPTFLDWRKRLKIASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDNFNAKVSDFGLSRLALPGISHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFARDENCVNLAIYVIQQVQNGAFIDAIDKQLISDDQSSNILISVKHFMELALACLREKKVERPFMKDVLQELEYITQILDNPETVAEEGMS 2262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30959868 30986757 + Lsi03G019560.1 Lsi03g01956 659706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01956 2262 ProSiteProfiles HECT domain profile. 884 1066 IPR000569 GO:0004842
Lsi03g01956 2262 Gene3D Hect, E3 ligase catalytic domain 1072 1108 - -
Lsi03g01956 2262 SMART serkin_6 1970 2246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01956 2262 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 1645 2256 - -
Lsi03g01956 2262 Coils Coil 1402 1436 - -
Lsi03g01956 2262 Gene3D Hect, E3 ligase catalytic domain 986 1065 - -
Lsi03g01956 2262 ProSiteProfiles Protein kinase domain profile. 1970 2246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g01956 2262 Gene3D - 1529 1655 IPR046357 GO:0003755
Lsi03g01956 2262 SUPERFAMILY FKBP-like 1540 1652 - -
Lsi03g01956 2262 ProSitePatterns Protein kinases ATP-binding region signature. 1976 1998 IPR017441 GO:0005524
Lsi03g01956 2262 ProSitePatterns Serine/Threonine protein kinases active-site signature. 2090 2102 IPR008271 GO:0004672|GO:0006468
Lsi03g01956 2262 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1572 1652 IPR001179 GO:0003755
Lsi03g01956 2262 Coils Coil 1322 1342 - -
Lsi03g01956 2262 SUPERFAMILY Protein kinase-like (PK-like) 1946 2247 IPR011009 -
Lsi03g01956 2262 Pfam Protein tyrosine and serine/threonine kinase 1972 2243 IPR001245 GO:0004672|GO:0006468
Lsi03g01956 2262 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1567 1652 IPR001179 GO:0003755
Lsi03g01956 2262 Gene3D Hect, E3 ligase catalytic domains 862 1066 - -
Lsi03g01956 2262 SUPERFAMILY Hect, E3 ligase catalytic domain 859 1133 IPR035983 GO:0004842
Lsi03g01956 2262 Coils Coil 1267 1294 - -
Lsi03g01956 2262 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1645 2256 IPR045274 GO:0007166
Lsi03g01956 2262 CDD STKc_IRAK 1976 2244 - -
Lsi03g01956 2262 Coils Coil 1353 1387 - -
Lsi03g01956 2262 ProSiteProfiles HECT domain profile. 1067 1102 IPR000569 GO:0004842
Lsi03g01956 2262 SMART hect_3 874 1176 IPR000569 GO:0004842
Lsi03g01956 2262 Gene3D Transferase(Phosphotransferase) domain 1 2046 2258 - -
Lsi03g01956 2262 Pfam HECT-domain (ubiquitin-transferase) 915 1065 IPR000569 GO:0004842
Lsi03g01956 2262 Gene3D Phosphorylase Kinase; domain 1 1941 2045 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00355 Lsi-Chr3:4205094 Lsi03g01956 Lsi-Chr3:30959868 0 dispersed
Lsi03g01956 Lsi-Chr3:30959868 Lsi08g00489 Lsi-Chr8:12774630 8.00E-88 dispersed
Lsi04g01825 Lsi-Chr4:25420564 Lsi03g01956 Lsi-Chr3:30959868 5.73E-17 dispersed
Lsi04g01829 Lsi-Chr4:25432642 Lsi03g01956 Lsi-Chr3:30959868 1.57E-17 dispersed
Lsi09g01511 Lsi-Chr9:23198554 Lsi03g01956 Lsi-Chr3:30959868 2.38E-54 dispersed
Lsi03g01956 Lsi-Chr3:30959868 Lsi01g01453 Lsi-Chr1:12657490 6.04E-178 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83512 PF07714 PK_Tyr_Ser-Thr 3.30E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01956 - K10588 csv:101205886 1266.91