Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g01957 ATGTCGGGCTTGACTGTGAAAGAAATGGAAGAGCTTCGTGATGACATCAAAATGCATCTTGATCTGGACAGGGCCACACCTACACATATCGAGTATTGGGAGGCACTTCTTGTGGTTTGTGATTGGGAACTAGCTGAAGCTCGGAAGAAGGATGCTCTGGATAGAGCCAGAGTTCGTGGTGAGGAGCCTCCTGCTGAGTTGCTTGCAGAAGAAAGGGGTCTGCATTCTAGCATTGAAACAGATGTCAAAAATCTGCTGGAAGGAAAGACTTATGGTGAATTGGAGGCATTACAATCTCAAATTGAGTCACAGATGCGATCTGGAACAGCAAAGGTGGTTGAGTACTGGGAGGCTGTCCTAAAGCGCCTTCATATATACAAGGCCAAGGCTTGCTTGAAGGAAATTCATACGAAAAAACTACATGAGCATCTTGTACGTCTTGAGCAACCTTTCGAGGATGATGAAGAACAGATGGAGCAAGAAGTCAAGATGGAAACTGACCATTCTTTACAAGTGAAAGCTGATGATGATGAGCATGATATTGAAGAACCCCAAACATATTCGCCTGATCTCCTTGAGGAAGAAGATAATCAAGAGGCAGGATCATTTTCACCAGAACTTATGCATGGTGATGAAGATGAAGAGGCAGTTGATCCTGAGGAGGATAGGGCCATACTGGAACGTAAGCGTATTGCTGTCTTAGAAGAACAGCAGAGACGGATTCAAGAAGCAATGGCTACAAAACCTGCTCCAGTAGAGGATAATTTTGAACTGAAAGCCTCAAAAGCCATGGGAATCATGGAGGAAGGCGATGCAGTTTTTGGATCTGGTGCTGAAGTGAACCTAGATTCACAGGTTTATTGGTGGCATGATAAATATCGTCCGAGAAAACCAAAATACTTCAATCGGGTTCATACGGGATATGAGTGGAACAAGTACAACCAGACTCACTACGATCATGACAATCCACCTCCAAAGATTGTGCAAGGATATAAATTTAACATCTTCTACCCAGACCTTGTTGACAAGACAAAAGCTCCAACTTACACCATTGAAAAGGATGGAAACAGCAGTGAGACATGTATCATACGGTTCCATGCGGGGCCACCGTATGAGGATATCGCATTCCGAATTGTAAACAAAGAATGGGAGTATTCTCATAAGAAGGGGTTCAAGTGCACATTTGAGCGTGGAATTTTGCACGTATACTTCAACTTTAAACGATATCGTTATCGCAGCAACTGTTTCTGGATTGTCCAATATCTGAGTTATGTATTCAAGTTCTTGGAGTACATCCTTCATGAAAGGCCTTTCCACTTTCTTCTCCCTCAAACAGGCGAGTGCGAGCTCCATGAAATGCTTCACACTTATCAGAATATTGCTGGACTGATCATCACTGATAAGCTGTTTATCAATGGCATCAATGAATGCGCCATTTTGCACTTGTTGGATCACATAGATTGCCAGATTGACACAATTTTCATCTCTTGCGAAATCTATGGCCTTCTGAGAGGAAGCCAGACATACCGAGAGCTTTATGCTGAGTCTAACCATGCTCTTCCTATTCGTTCTCAGGCATGTTCCAAGAATATGATCCCAATAGTAGCTACTTCTGCAAAGGCAACGAGAACGGCTATTGGAACCACCGGTAGGAAGACAATCCGACGCTCCAGTGCAATCAGATTGAGCTCTACAGATTGGTTCAGGTGGAGGAGCCCATTGCATTTCCAAACCTTCCTCCCACTGATTTGCAGGCTTTTCTACATCCAGATGGAGGATACTCCTGAGTGCTCTACAGCCTGA 1803 43.93 MSGLTVKEMEELRDDIKMHLDLDRATPTHIEYWEALLVVCDWELAEARKKDALDRARVRGEEPPAELLAEERGLHSSIETDVKNLLEGKTYGELEALQSQIESQMRSGTAKVVEYWEAVLKRLHIYKAKACLKEIHTKKLHEHLVRLEQPFEDDEEQMEQEVKMETDHSLQVKADDDEHDIEEPQTYSPDLLEEEDNQEAGSFSPELMHGDEDEEAVDPEEDRAILERKRIAVLEEQQRRIQEAMATKPAPVEDNFELKASKAMGIMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGNSSETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRSNCFWIVQYLSYVFKFLEYILHERPFHFLLPQTGECELHEMLHTYQNIAGLIITDKLFINGINECAILHLLDHIDCQIDTIFISCEIYGLLRGSQTYRELYAESNHALPIRSQACSKNMIPIVATSAKATRTAIGTTGRKTIRRSSAIRLSSTDWFRWRSPLHFQTFLPLICRLFYIQMEDTPECSTA 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30985417 30997834 - Lsi03G019570.1 Lsi03g01957 659707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g01957 600 MobiDBLite consensus disorder prediction 161 186 - -
Lsi03g01957 600 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 2 412 - -
Lsi03g01957 600 Pfam Cactus-binding C-terminus of cactin protein 289 412 IPR019134 GO:0005515
Lsi03g01957 600 PANTHER BNAC05G02180D PROTEIN 2 412 - -
Lsi03g01957 600 MobiDBLite consensus disorder prediction 151 222 - -
Lsi03g01957 600 SMART CactinC_cactus_3 289 413 - -
Lsi03g01957 600 Pfam Conserved mid region of cactin 2 136 IPR018816 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g01957 K25058 - csv:101205416 818.92